PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

KHN39820.1

Organism

Glycine soja

Taxonomic ID

3848

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja

Family

SRS

Protein Properties

Length: 215aa MW: 24179.3 Da PI: 9.1277

Description

SRS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
KHN39820.1	genome	TCUHK	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF702	93	6.2e-29	7	70	4	70
DUF702 4 gtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasaaea 70 ++++C+dCGnqakkdC+++RCRtCCk+++f+C+th++stW+p+++rr+++ +++ ++++ +a+ KHN39820.1 7 KGSKCEDCGNQAKKDCEYSRCRTCCKNKAFKCQTHIRSTWIPVDRRRHQKLEHQPLTTNLKAD---T 70 6789********************************************866666665554433...3 PP
2	DUF702	76	1e-23	72	138	89	155
DUF702 89 tklssaeskkeletsslPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGleek 155 k +++++ ++le ++P+ +ss+a+f+cv+v+s+dd +e+aYqt+v+igGhvf+G+LydqG++++ KHN39820.1 72 PKRHKHNPYSSLEEFKFPAVMSSMALFSCVQVRSMDDTVNEIAYQTSVNIGGHVFSGLLYDQGPQQQ 138 4445667777888888************************************************975 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF05142	5.1E-44	8	136	IPR007818	Protein of unknown function DUF702
TIGRFAMs	TIGR01623	1.3E-24	10	52	IPR006510	Zinc finger, lateral root primordium type 1
TIGRFAMs	TIGR01624	5.2E-20	87	135	IPR006511	Lateral Root Primordium type 1, C-terminal

Sequence ? help Back to Top
Protein Sequence Length: 215 aa Download sequence Send to blast
MEAQVVKGSK CEDCGNQAKK DCEYSRCRTC CKNKAFKCQT HIRSTWIPVD RRRHQKLEHQ 60 PLTTNLKADT IPKRHKHNPY SSLEEFKFPA VMSSMALFSC VQVRSMDDTV NEIAYQTSVN 120 IGGHVFSGLL YDQGPQQQSF NVSKGDNNSS IDPFVQQHSL NLRSSASIHT RNGASANMPP 180 LSATASAQEP FFPPPHPFPL ASFRPDMRYL SHPKP

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that binds DNA on 5'-ACTCTAC-3' and promotes auxin homeostasis-regulating gene expression (e.g. YUC genes), as well as genes affecting stamen development, cell expansion and timing of flowering. Synergistically with other SHI-related proteins, regulates gynoecium, stamen and leaf development in a dose-dependent manner, controlling apical-basal patterning. Promotes style and stigma formation, and influences vascular development during gynoecium development. May also have a role in the formation and/or maintenance of the shoot apical meristem (SAM). {ECO:0000269\|PubMed:16740146}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	KHN39820.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AJ580823	2e-46	AJ580823.1 Lotus corniculatus var. japonicus ORF1, ORF2, ORF3 and genes for vacuolar proton-ATPase subunit-like protein, papain-like cysteine proteinase-like protein 1 and papain-like cysteine proteinase-like protein 2.
GenBank	AP005666	2e-46	AP005666.1 Lotus japonicus genomic DNA, chromosome 3, clone: LjT09E01, TM0258b.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006590877.2	1e-162	protein SHI RELATED SEQUENCE 1
Refseq	XP_028191137.1	1e-163	protein SHI RELATED SEQUENCE 3-like, partial
Swissprot	Q9SJT8	4e-46	SRS3_ARATH; Protein SHI RELATED SEQUENCE 3
TrEMBL	A0A445I037	1e-161	A0A445I037_GLYSO; Protein SHI RELATED SEQUENCE 3 (Fragment)
STRING	GLYMA11G12101.1	1e-162	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF9969	25	41

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G21400.1	1e-48	SHI-related sequence3