PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN39824.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family DBB
Protein Properties Length: 288aa    MW: 31836.8 Da    PI: 6.8075
Description DBB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN39824.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box21.35.6e-07444539
    zf-B_box  5 kCpeHeekelqlfCedCqqllCedClleeHkg......Htv 39
                 C+ ++++ +++fC +++  lC+ C  ++H+       H++
  KHN39824.1  4 QCDVCHNEVASFFCPSDEASLCHACDRTIHHAnkladkHKR 44
                7****************************744477777765 PP
2zf-B_box29.12e-095592338
    zf-B_box  3 erkCpeHeekelqlfCedCqqllCedClleeHkg...Ht 38
                 + C+ ++e ++ lfC++++  lC++C l++H g   Ht
  KHN39824.1 55 SPLCDICHERRAYLFCKEDRAILCRECDLSIH-GvneHT 92
                689*****************************.667776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011910.793147IPR000315B-box-type zinc finger
CDDcd000213.29E-7333No hitNo description
PfamPF006436.6E-6444IPR000315B-box-type zinc finger
SMARTSM003365.1E-8447IPR000315B-box-type zinc finger
SMARTSM003361.7E-1553100IPR000315B-box-type zinc finger
PROSITE profilePS5011910.77953100IPR000315B-box-type zinc finger
PfamPF006433.8E-75593IPR000315B-box-type zinc finger
CDDcd000219.18E-1156100No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 288 aa     Download sequence    Send to blast
MKIQCDVCHN EVASFFCPSD EASLCHACDR TIHHANKLAD KHKRFSLHHP TSKDSPLCDI  60
CHERRAYLFC KEDRAILCRE CDLSIHGVNE HTKKHNRFLL TGVKIGADAS DPTSLSSNDT  120
AIEERTTSSS KINRPISSLS NENISSSPTV GDNMACDTGS VSTSSISEYL IQTIPGYCME  180
DLLDASFASN GLSKDYEHQS AFQNQDVQVS MCSFPLQSWV PQSQAGSPQL ISTTSNLHPQ  240
INSLVGVMEM PKAKASEGYS NCIYNYDYSA YKVPSICPPL IKKCKRSR
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN39824.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003539006.10.0B-box zinc finger protein 20
RefseqXP_028188619.10.0B-box zinc finger protein 20-like
TrEMBLA0A0R0HLR00.0A0A0R0HLR0_SOYBN; Uncharacterized protein
TrEMBLA0A445I0440.0A0A445I044_GLYSO; B-box zinc finger protein 21 isoform A
STRINGGLYMA11G12060.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF14483494
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75540.18e-62salt tolerance homolog2
Publications ? help Back to Top
  1. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]