PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN39869.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family MYB
Protein Properties Length: 338aa    MW: 38065.7 Da    PI: 7.0627
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN39869.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding60.63.4e-191865148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT+eEd +lvd+++++G g+W++ ++  g++R++k+c++rw +yl
       KHN39869.1 18 KGPWTPEEDRILVDYIQKHGHGSWRALPKLAGLNRCGKSCRLRWSNYL 65
                     79********************************************97 PP
2Myb_DNA-binding54.72.4e-1771116148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      rg++++eE++l+++++  lG++ W++Ia +++ gRt++++k++w+++l
       KHN39869.1  71 RGKFSEEEQQLIINLHSVLGNK-WSAIAGHLP-GRTDNEIKNFWNTHL 116
                      89********************.*********.************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.604.9E-251168IPR009057Homeodomain-like
PROSITE profilePS5129418.681365IPR017930Myb domain
SuperFamilySSF466893.88E-3215112IPR009057Homeodomain-like
SMARTSM007171.9E-151767IPR001005SANT/Myb domain
PfamPF002492.0E-171865IPR001005SANT/Myb domain
CDDcd001675.34E-122065No hitNo description
PROSITE profilePS5129427.1366120IPR017930Myb domain
Gene3DG3DSA:1.10.10.604.1E-2769120IPR009057Homeodomain-like
SMARTSM007171.9E-1670118IPR001005SANT/Myb domain
PfamPF002494.8E-1671116IPR001005SANT/Myb domain
CDDcd001673.33E-1273116No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 338 aa     Download sequence    Send to blast
MMGRTPFACS SDENGLKKGP WTPEEDRILV DYIQKHGHGS WRALPKLAGL NRCGKSCRLR  60
WSNYLRPDIK RGKFSEEEQQ LIINLHSVLG NKWSAIAGHL PGRTDNEIKN FWNTHLKKKL  120
LQMGLDPVTH RPRSDHLNLL SNLQQLLAAT NIVSNILTNT WDSTHNALRL QSDAKLQLLQ  180
NILQVPTSNL DLLNPFGPSD GFLNEVLGLN QSNKLQNLYN NGSSTDGFPS QNQPNIQSFE  240
APHQQQTLPN GGSINRSSMK SEKLDAPYSS STAFVNSLPN LVSASPEYCS THVMQMENKV  300
NPNEFSDPSS TSTNNFEMWG DFMYEEVSDA YWKDLKIE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A5e-29161205108B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250|UniProtKB:Q9M2D9}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN39869.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by gravity in roots. {ECO:0000269|PubMed:24902892}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB1086510.0AB108651.1 Glycine max MYB101 mRNA for transcription factor MYB101, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003538990.20.0transcription factor MYB53
RefseqXP_028188644.10.0transcription factor MYB53-like
SwissprotQ9SBF34e-83MYB92_ARATH; Transcription factor MYB92
TrEMBLA0A445HZV20.0A0A445HZV2_GLYSO; Transcription factor MYB92
STRINGGLYMA11G11570.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF40234172
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G16770.21e-90myb domain protein 9
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]