PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN40140.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family LBD
Protein Properties Length: 214aa    MW: 23495.9 Da    PI: 8.492
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN40140.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260126.81e-39161161100
      DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallk 98 
                 +C aCk+lrrkC+k+C++apyf ++q +++fa+vhk+FGasn +kll ++p ++r da+ +l+yeA arardPvyG+vg++++lqqq+++l+ael +++
  KHN40140.1  16 PCGACKFLRRKCVKGCIFAPYFDSDQgTAHFAAVHKVFGASNASKLLMRIPAHKRLDAVVTLCYEALARARDPVYGCVGHLFALQQQVMNLQAELTYVQ 114
                 7***********************9989********************************************************************998 PP

      DUF260  99 ee 100
                 ++
  KHN40140.1 115 AR 116
                 76 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089123.4815117IPR004883Lateral organ boundaries, LOB
PfamPF031951.2E-3816114IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 214 aa     Download sequence    Send to blast
MDCGGNKIGG SDRGGPCGAC KFLRRKCVKG CIFAPYFDSD QGTAHFAAVH KVFGASNASK  60
LLMRIPAHKR LDAVVTLCYE ALARARDPVY GCVGHLFALQ QQVMNLQAEL TYVQARLATR  120
RGLPMQVAPL PHPQSSSPPP TFHSSDHLAS NADLQSAPMM HFDPLQPHSA SLELSSVVFN  180
QSDQQLEDRE LQVLAREFVS KYLPGVRFQQ YNSP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A1e-36141179111LOB family transfactor Ramosa2.1
5ly0_B1e-36141179111LOB family transfactor Ramosa2.1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN40140.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2354101e-137AC235410.1 Glycine max strain Williams 82 clone GM_WBb0128C24, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028238646.11e-155LOB domain-containing protein 19-like
SwissprotO813228e-68LBD31_ARATH; LOB domain-containing protein 31
TrEMBLA0A0B2S4E41e-157A0A0B2S4E4_GLYSO; LOB domain-containing protein 31
STRINGXP_007134896.11e-135(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF17713493
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00210.16e-69LOB domain-containing protein 31
Publications ? help Back to Top
  1. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]