PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN40198.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family ARF
Protein Properties Length: 675aa    MW: 75251.6 Da    PI: 6.2793
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN40198.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B372.26.6e-23124225198
                 EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE.. CS
          B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefel 92 
                 f+k+lt sd++++g +++ +++a+++       +++    ++l+ +d++g++W +++i+r++++r++lt+GW+ Fv++++L +gD ++F ++g +++el
  KHN40198.1 124 FCKTLTASDTSTHGGFSVLRRHADDClppldmsQQP--PWQELVATDLHGNEWHFRHIFRGQPKRHLLTTGWSVFVSSKKLAAGDAFIFLRQG-ENGEL 219
                 99****************************964333..4459************************************************766.9999* PP

                 EEEEE- CS
          B3  93 vvkvfr 98 
                 +v+v+r
  KHN40198.1 220 RVGVRR 225
                 ****98 PP
2Auxin_resp105.75.3e-35251334183
  Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldp.vrWpnSkWrsLk 83 
                 a+ha++t++ F+v+Y+Pr+s+seF+v+v+k+++  ++k+svGmRfkm+fe+++ +err+sGt+vgv d ++ + Wp+S+WrsLk
  KHN40198.1 251 ASHAIATGTLFSVFYKPRTSRSEFIVSVNKYLEVQSHKLSVGMRFKMRFEGDEIPERRFSGTIVGVGDNKSsSVWPDSEWRSLK 334
                 789***************************************************************99876157********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.106.9E-40116240IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019364.19E-42120254IPR015300DNA-binding pseudobarrel domain
CDDcd100171.12E-20122225No hitNo description
PfamPF023629.0E-21124225IPR003340B3 DNA binding domain
PROSITE profilePS5086311.335124227IPR003340B3 DNA binding domain
SMARTSM010194.0E-21124227IPR003340B3 DNA binding domain
PfamPF065076.4E-33251334IPR010525Auxin response factor
PfamPF023095.7E-7543591IPR033389AUX/IAA domain
PROSITE profilePS5174528.002551644IPR000270PB1 domain
SuperFamilySSF542772.6E-11553628No hitNo description
PfamPF023093.1E-6598641IPR033389AUX/IAA domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009734Biological Processauxin-activated signaling pathway
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 675 aa     Download sequence    Send to blast
MASTLKSGGI HTGAINDDLY KELWHACAGP LVTLPREGER VYYFPQGHME QLEASMYEGL  60
EQQMPSFNLP SKILCKVVNV HLRAEPETDE VYAQITLLPE ADQSEVTSPD DPLPESPRVK  120
IHSFCKTLTA SDTSTHGGFS VLRRHADDCL PPLDMSQQPP WQELVATDLH GNEWHFRHIF  180
RGQPKRHLLT TGWSVFVSSK KLAAGDAFIF LRQGENGELR VGVRRVMRQQ SNVPSSVISS  240
HSMHLGVLAT ASHAIATGTL FSVFYKPRTS RSEFIVSVNK YLEVQSHKLS VGMRFKMRFE  300
GDEIPERRFS GTIVGVGDNK SSSVWPDSEW RSLKVQWDEP SSILRPDRVS SWELEPLVST  360
TLANSQPTQR NKRARPLILP STMPDSSLQG IWKSSVESTS FSYCDPQQGR GLYPSPKFNS  420
SATNFIGFSG NSSVGSPSNK SIYWSNRMEN NLESISAIAL KEAGEKRQGT GNGCRLFGIQ  480
LLENSNAEGN LQTVTLSGRV GDDRSVPSLD AESDQHSEPS NANRSDIPSV SCDAEKSCLQ  540
SPQESQSKQI RSCTKVHMQG MAVGRAVDLT RFDGYEDLLR KLEDMFNIKT ELCGSLKKWQ  600
VVYTDNEDDM MMVGDDPWDE FCSVVRKIFI YTAEEVKKLS PKIRLPMNEK VNPSKQDSEA  660
IVNPEDQSSN MGPSC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldv_A0.013591357Auxin response factor 1
4ldw_A0.013591357Auxin response factor 1
4ldw_B0.013591357Auxin response factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). Seems to act as transcriptional repressor. Formation of heterodimers with Aux/IAA proteins may alter their ability to modulate early auxin response genes expression. Promotes flowering, stamen development, floral organ abscission and fruit dehiscence. Acts as repressor of IAA2, IAA3 and IAA7. {ECO:0000269|PubMed:12036261, ECO:0000269|PubMed:16176952}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN40198.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150341e-178AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003528726.10.0auxin response factor 1
RefseqXP_028242023.10.0auxin response factor 1-like
SwissprotQ8L7G00.0ARFA_ARATH; Auxin response factor 1
TrEMBLA0A0B2S6610.0A0A0B2S661_GLYSO; Auxin response factor
STRINGGLYMA07G40270.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF68022638
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G59750.40.0auxin response factor 1
Publications ? help Back to Top
  1. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]
  2. Montesinos JC,Pastor-Cantizano N,Robinson DG,Marcote MJ,Aniento F
    Arabidopsis p24δ5 and p24δ9 facilitate Coat Protein I-dependent transport of the K/HDEL receptor ERD2 from the Golgi to the endoplasmic reticulum.
    Plant J., 2014. 80(6): p. 1014-30
    [PMID:25312353]
  3. Marais C, et al.
    The Qb-SNARE Memb11 interacts specifically with Arf1 in the Golgi apparatus of Arabidopsis thaliana.
    J. Exp. Bot., 2015. 66(21): p. 6665-78
    [PMID:26208648]
  4. Wójcikowska B,Gaj MD
    Expression profiling of AUXIN RESPONSE FACTOR genes during somatic embryogenesis induction in Arabidopsis.
    Plant Cell Rep., 2017. 36(6): p. 843-858
    [PMID:28255787]
  5. Zhang M,Hu X,Zhu M,Xu M,Wang L
    Transcription factors NF-YA2 and NF-YA10 regulate leaf growth via auxin signaling in Arabidopsis.
    Sci Rep, 2017. 7(1): p. 1395
    [PMID:28469131]