PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN40205.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family ZF-HD
Protein Properties Length: 204aa    MW: 22784.9 Da    PI: 8.8356
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN40205.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer69.65.1e-221421759
  ZF-HD_dimer 17 lGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRrevee 59
                 +Gg+a+DGCgEfmps geegt++al+C+AC CHRnFHR+eve 
   KHN40205.1  1 MGGNATDGCGEFMPS-GEEGTIEALNCSACHCHRNFHRKEVEG 42
                 7*************9.999*********************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD1257749.0E-18143IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMsTIGR015661.5E-21140IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PfamPF047703.1E-19140IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152319.388139IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
Gene3DG3DSA:1.10.10.601.7E-29124193IPR009057Homeodomain-like
SuperFamilySSF466896.87E-18127192IPR009057Homeodomain-like
TIGRFAMsTIGR015658.5E-27131187IPR006455Homeodomain, ZF-HD class
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 204 aa     Download sequence    Send to blast
MGGNATDGCG EFMPSGEEGT IEALNCSACH CHRNFHRKEV EGEPSCDYHH LNINRRRHIL  60
GPHKNLLPPE ALGYPTAARS VPPHQMIMPY NIGGIGHHLP SESDEQEDGG GGGGMVQLSS  120
RPISSQQQLV KKRFRTKFSQ EQKDKMLNFA EKVGWKIQKQ EESVVQQFCQ EIGVKRRVLK  180
VWMHNNKHNL AKKNPPTTAA PPPP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wh5_A3e-231301891675ZF-HD homeobox family protein
1wh7_A2e-231321891875ZF-HD homeobox family protein
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN40205.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150348e-83AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006584131.11e-152zinc-finger homeodomain protein 4
RefseqXP_028242012.11e-152zinc-finger homeodomain protein 4-like
SwissprotO647225e-65ZHD3_ARATH; Zinc-finger homeodomain protein 3
TrEMBLA0A0B2S4K81e-151A0A0B2S4K8_GLYSO; ZF-HD homeobox protein
TrEMBLA0A445K2G31e-151A0A445K2G3_GLYSO; Zinc-finger homeodomain protein 3
TrEMBLI1KNQ91e-151I1KNQ9_SOYBN; Uncharacterized protein
STRINGGLYMA07G40190.11e-151(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF20634253
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G14440.21e-65homeobox protein 31
Publications ? help Back to Top
  1. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]
  2. González-Grandío E, et al.
    Abscisic acid signaling is controlled by a BRANCHED1/HD-ZIP I cascade in Arabidopsis axillary buds.
    Proc. Natl. Acad. Sci. U.S.A., 2017. 114(2): p. E245-E254
    [PMID:28028241]
  3. Li B, et al.
    Network-Guided Discovery of Extensive Epistasis between Transcription Factors Involved in Aliphatic Glucosinolate Biosynthesis.
    Plant Cell, 2018. 30(1): p. 178-195
    [PMID:29317470]