PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN40312.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family WOX
Protein Properties Length: 210aa    MW: 24174.2 Da    PI: 9.0545
Description WOX family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN40312.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox64.51.5e-20766357
                --SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
    Homeobox  3 kRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
                +R+++t+eql +Leel+++  r+psa+++++++++l    +++ ++V++WFqN++a++++
  KHN40312.1  7 PRWSPTTEQLMILEELYRSgIRTPSASQIQQITTHLsfygRIEGKNVFYWFQNHKARDRQ 66
                8*****************99*************************************996 PP
2Wus_type_Homeobox117.65.5e-38667364
  Wus_type_Homeobox  3 rtRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqk 64
                       ++RW+Pt+eQ++iLeely+sG+rtP++++iq+it++L+ yG+ie+kNVfyWFQN+kaR+rqk
         KHN40312.1  6 SPRWSPTTEQLMILEELYRSGIRTPSASQIQQITTHLSFYGRIEGKNVFYWFQNHKARDRQK 67
                       68***********************************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007110.641267IPR001356Homeobox domain
SMARTSM003893.5E-4471IPR001356Homeobox domain
PfamPF000464.6E-18766IPR001356Homeobox domain
CDDcd000861.76E-4767No hitNo description
Gene3DG3DSA:1.10.10.602.7E-8766IPR009057Homeodomain-like
SuperFamilySSF466892.99E-11767IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 210 aa     Download sequence    Send to blast
MSPAGSPRWS PTTEQLMILE ELYRSGIRTP SASQIQQITT HLSFYGRIEG KNVFYWFQNH  60
KARDRQKLRR KLTKQLQLQQ QQQQQLQLHH HCPKLNQDHF TNHFVGNFGY STLRSTTHDF  120
PFFNPPSLLF QGGAANTSSE QALSCKWNVH NPQSNLVESK EMAFCNYGWT LVDVDNNQAS  180
SCCTTRPVKT LDLFPLTTTR ISEDCTTPPK
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN40312.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150371e-106AP015037.1 Vigna angularis var. angularis DNA, chromosome 4, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006583586.11e-158WUSCHEL-related homeobox 3
RefseqXP_028238622.11e-158WUSCHEL-related homeobox 3-like
TrEMBLA0A445JW661e-157A0A445JW66_GLYSO; Putative WUSCHEL-related homeobox 2
STRINGGLYMA07G15710.21e-157(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF106322940
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28610.14e-35WOX family protein
Publications ? help Back to Top
  1. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]