PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

KHN40356.1

Organism

Glycine soja

Taxonomic ID

3848

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja

Family

C3H

Protein Properties

Length: 332aa MW: 36671.9 Da PI: 7.5858

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
KHN40356.1	genome	TCUHK	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	25.2	2.9e-08	101	122	4	26
---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHg 26 + C+ f++ G Ck Gd+C FaHg KHN40356.1 101 AACPEFRK-GNCKKGDTCEFAHG 122 78****.***********9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00356	1.2E-5	97	123	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	13.112	98	124	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	3.3E-6	101	122	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	1.1E-4	102	124	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	6.643	132	156	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	14	132	155	IPR000571	Zinc finger, CCCH-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006979	Biological Process	response to oxidative stress
GO:0009867	Biological Process	jasmonic acid mediated signaling pathway
GO:0010150	Biological Process	leaf senescence
GO:0005634	Cellular Component	nucleus
GO:0005886	Cellular Component	plasma membrane
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 332 aa Download sequence Send to blast
MYSAFLTNDV NAGEYSPYYL QEALTALQRF LPSNETDADS DTEAQPDAAV DAYSCDHFRM 60 YEFKVRRCAR GRSHDWTECP YAHPGEKARR RDPRKFHYSG AACPEFRKGN CKKGDTCEFA 120 HGVFECWLHP ARYRTQPCKD GTSCRRRVCF FAHTPEQLRV LPMQSPRSAA NSSESYDGSP 180 MRQMMSPAAF ISSPAASPSP PESPPVSPSI NEMGASLRNL QLGKMKSMPQ SRNVSVGSPG 240 YGSPRGSVLR PGFCSLPTTP TQQPVRSGVN CFDFWDQSCE EEPVMERVES GRGIRAKMFE 300 KLSKENSLEG SGTGSGQGSG APDVGWVSEL VN

Cis-element ? help Back to Top
Source	Link
PlantRegMap	KHN40356.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_003529068.1	0.0	zinc finger CCCH domain-containing protein 20
Refseq	XP_028240230.1	0.0	zinc finger CCCH domain-containing protein 20-like
Swissprot	O82199	1e-123	C3H20_ARATH; Zinc finger CCCH domain-containing protein 20
TrEMBL	A0A445JW01	0.0	A0A445JW01_GLYSO; Zinc finger CCCH domain-containing protein 20
TrEMBL	I1KJS9	0.0	I1KJS9_SOYBN; Uncharacterized protein
STRING	GLYMA07G15240.1	0.0	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF2056	31	76

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G19810.1	1e-123	C3H family protein

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Qi X, et al. Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing. Nat Commun, 2014. 5: p. 4340 [PMID:25004933] Swain S,Singh N,Nandi AK Identification of plant defence regulators through transcriptional profiling of Arabidopsis thaliana cdd1 mutant. J. Biosci., 2015. 40(1): p. 137-46 [PMID:25740148] Singh N,Swain S,Singh A,Nandi AK AtOZF1 Positively Regulates Defense Against Bacterial Pathogens and NPR1-Independent Salicylic Acid Signaling. Mol. Plant Microbe Interact., 2018. 31(3): p. 323-333 [PMID:29327969]