PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN40466.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family C3H
Protein Properties Length: 347aa    MW: 38194.7 Da    PI: 7.6142
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN40466.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH361.2e-112147127
                --S---SGGGGTS--TTTTT-SS-SSS CS
     zf-CCCH  1 yktelCrffartGtCkyGdrCkFaHgp 27
                ++++ C+++ rtG C++G++C+F+H+p
  KHN40466.1 21 PGEPDCSYYIRTGLCRFGATCRFNHPP 47
                5789*********************97 PP
2zf-CCCH37.73.3e-125377327
                S---SGGGGTS--TTTTT-SS-SSS CS
     zf-CCCH  3 telCrffartGtCkyGdrCkFaHgp 27
                +++C +++rtG+Ck+G++CkF+H++
  KHN40466.1 53 EPECGYYLRTGQCKFGNTCKFHHPQ 77
                589********************97 PP
3zf-CCCH38.91.4e-12209234227
                 -S---SGGGGTS--TTTTT-SS-SSS CS
     zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                 ++++C+f+++tG Ck+G+ C+F+H++
  KHN40466.1 209 DQPECQFYMKTGDCKFGAVCRFHHPR 234
                 689*********************96 PP
4zf-CCCH38.51.9e-12254280127
                 --S---SGGGGTS--TTTTT-SS-SSS CS
     zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                 ++++lC f++r+G+Ck+G++CkF H++
  KHN40466.1 254 PGEPLCVFYSRYGICKFGPSCKFDHPM 280
                 589**********************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003561.2E-42047IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.9762148IPR000571Zinc finger, CCCH-type
PfamPF006424.1E-82247IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.53E-52548IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.106.5E-42646IPR000571Zinc finger, CCCH-type
SMARTSM003563.5E-55077IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.6995078IPR000571Zinc finger, CCCH-type
SuperFamilySSF902299.55E-65378IPR000571Zinc finger, CCCH-type
PfamPF006428.1E-105377IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.106.4E-45676IPR000571Zinc finger, CCCH-type
SMARTSM003567.0E-5207234IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.624207235IPR000571Zinc finger, CCCH-type
PfamPF006424.7E-9209234IPR000571Zinc finger, CCCH-type
SuperFamilySSF902298.9E-6210236IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.108.3E-5213235IPR000571Zinc finger, CCCH-type
SMARTSM003561.4E-7253280IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.821253281IPR000571Zinc finger, CCCH-type
PfamPF006423.6E-9255280IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.31E-5256280IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.2E-4258278IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0016740Molecular Functiontransferase activity
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 347 aa     Download sequence    Send to blast
MWQINLRSSE TMESEPYPEH PGEPDCSYYI RTGLCRFGAT CRFNHPPNRK LNEPECGYYL  60
RTGQCKFGNT CKFHHPQPNN MVLSMRSSPV YPTVHSPTTP GHQSYATGIT NWSSSSYIPS  120
PRWQGPSSYA PLILPQGMVS VSGWSAYSGQ MGSDSPQQTM ANGQSYGTSR QSEPANSGSQ  180
GAYSQFRSGS VPVGFYALQR ENIFPERPDQ PECQFYMKTG DCKFGAVCRF HHPRERMIPA  240
PDCVLSPIGL PLRPGEPLCV FYSRYGICKF GPSCKFDHPM GVFTYNMSAS PLADAPGRRM  300
LGSSSGTSAL NLSSEGLVES GSANPRRLSL SETRQIPSGD DNIDEEG
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN40466.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU6241380.0EU624138.1 Medicago sativa zinc finger protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014626504.10.0zinc finger CCCH domain-containing protein ZFN-like isoform X2
RefseqXP_028213695.10.0zinc finger CCCH domain-containing protein ZFN-like
SwissprotQ9SWF90.0ZFNL_PEA; Zinc finger CCCH domain-containing protein ZFN-like
TrEMBLA0A371GB850.0A0A371GB85_MUCPR; Uncharacterized protein (Fragment)
TrEMBLA0A445FWS90.0A0A445FWS9_GLYSO; Zinc finger CCCH domain-containing protein ZFN-like isoform B
TrEMBLI1N3Y40.0I1N3Y4_SOYBN; Uncharacterized protein
STRINGGLYMA18G47660.30.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF53213355
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02830.11e-124zinc finger protein 1
Publications ? help Back to Top
  1. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]