PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN40508.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family bHLH
Protein Properties Length: 239aa    MW: 26801.9 Da    PI: 9.9897
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN40508.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH31.62.9e-1083130355
                 HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
         HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                 r h  +Er+RR+++N+++  L   +        kK +Ka ++++Av+Y+k+L+
  KHN40508.1  83 RVHILAERKRREELNKSIVALSATILGF-----KKTDKANVVREAVKYVKQLE 130
                 56999**********************8.....8*****************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474595.23E-1480142IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088814.08180129IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.105.6E-1281141IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000838.56E-981133No hitNo description
PfamPF000106.0E-884130IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.9E-986135IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0055114Biological Processoxidation-reduction process
GO:0032440Molecular Function2-alkenal reductase [NAD(P)] activity
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 239 aa     Download sequence    Send to blast
MIFQQQVFSP KSKPSSSSSS SSSSSSFLQS NLKSCSSFST GGYVLSFDNN HIVEPRYPQN  60
PFSKSVAQSH CVEPKAFPRT RPRVHILAER KRREELNKSI VALSATILGF KKTDKANVVR  120
EAVKYVKQLE ERVNELENQK RKEGVNSIIL TKKTPLSINN IDQAITHGCV DVEEEVLKVK  180
VTVLDKELLI GIYCEKQRQT MLKILSLLDD LHLSITPTSV LPFGTSTLKI TIIAQVHYI
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
18893ERKRRE
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN40508.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028212147.11e-171transcription factor bHLH25-like
TrEMBLA0A0R0FFK31e-139A0A0R0FFK3_SOYBN; Uncharacterized protein
STRINGGLYMA18G48143.11e-141(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF1872846
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37850.18e-26bHLH family protein
Publications ? help Back to Top
  1. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]