PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN40556.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family ERF
Protein Properties Length: 202aa    MW: 22467.1 Da    PI: 7.5998
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN40556.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP266.36e-2176126255
         AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                 +y+GVr+++ +g+++AeIrdp++ng  +r++lg+++t+e+Aa a+++a+ k++g
  KHN40556.1  76 HYRGVRRRP-WGKFAAEIRDPKKNG--ARVWLGTYDTEEKAALAYDKAAFKMRG 126
                 8********.***********9998..*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.10.180.109.7E-52288IPR029068Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase
CDDcd000189.77E-3275136No hitNo description
PROSITE profilePS5103224.47476134IPR001471AP2/ERF domain
SMARTSM003801.9E-3976140IPR001471AP2/ERF domain
PfamPF008472.7E-1576126IPR001471AP2/ERF domain
SuperFamilySSF541719.15E-2476135IPR016177DNA-binding domain
PRINTSPR003671.6E-137788IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.105.4E-3389135IPR001471AP2/ERF domain
PRINTSPR003671.6E-13116136IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 202 aa     Download sequence    Send to blast
MVSATVDSDF AFLESVQQYL LGHDSINLMS ETHQAASHDP FSDPNKCDGD SGNIAFRSED  60
ATAVVARDHA PPTWKHYRGV RRRPWGKFAA EIRDPKKNGA RVWLGTYDTE EKAALAYDKA  120
AFKMRGQKAK LNFPHLIDSD NSDELSEPVM MTTSKRSLLE ISSPSSSCSD DSSESQGTKR  180
RKSLAELLNK LAKNRSQVKV EC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A6e-3275139468ATERF1
3gcc_A6e-3275139468ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtActs as a transcriptional activator and may be involved in disease resistance pathways. Binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways mediated by ethylene, that seems to depend on a protein kinase cascade, and to be influenced by methyl-jasmonate. {ECO:0000269|PubMed:10652129, ECO:0000269|PubMed:10792818, ECO:0000269|PubMed:7756828, ECO:0000269|Ref.2}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN40556.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by ethephon (ethylene-releasing compound) in buds and to a lower extent in leaves. Strongly induced by cycloheximide and mechanical stimuli. Wounding leads to a both local and systemic expression, independently of ethylene, and through a de-novo-protein-synthesis-independent regulation. Wound induction is reduced by methyl-jasmonate. Induction by purified xylanase from Trichoderma viride (TvX) and another elicitor from Phytophthora infestans (PiE), that appears to be mediated by both protein kinases and protein phosphatases. {ECO:0000269|PubMed:10652129, ECO:0000269|PubMed:12090623, ECO:0000269|PubMed:7756828, ECO:0000269|Ref.2}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF3572110.0AF357211.1 Glycine max ethylene-responsive element binding protein 1 (EREBP1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001237801.11e-151ethylene-responsive element binding protein 1
RefseqXP_028213004.11e-151ethylene-responsive transcription factor 2-like
SwissprotQ404799e-38ERF2_TOBAC; Ethylene-responsive transcription factor 2
TrEMBLA0A445FW741e-149A0A445FW74_GLYSO; Ethylene-responsive transcription factor 2
TrEMBLQ8LLR31e-149Q8LLR3_SOYBN; Ethylene-responsive element binding protein 1
STRINGGLYMA18G48730.11e-150(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF51233157
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G44840.13e-36ethylene-responsive element binding factor 13
Publications ? help Back to Top
  1. Nakano T,Nishiuchi T,Suzuki K,Fujimura T,Shinshi H
    Studies on transcriptional regulation of endogenous genes by ERF2 transcription factor in tobacco cells.
    Plant Cell Physiol., 2006. 47(4): p. 554-8
    [PMID:16452120]
  2. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]