PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN40557.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family ERF
Protein Properties Length: 211aa    MW: 23690.5 Da    PI: 7.5017
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN40557.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP260.44.3e-1966116255
         AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                 +y+GVr+++ +g+++AeIrdp++ng   r++lg++  +eeAa a+++a+ +++g
  KHN40557.1  66 RYRGVRRRP-WGKFAAEIRDPKKNG--SRVWLGTYVNEEEAALAYDKAAFNMRG 116
                 7********.***********9998..*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.102.1E-3166125IPR001471AP2/ERF domain
SMARTSM003809.9E-3666130IPR001471AP2/ERF domain
PfamPF008473.1E-1366116IPR001471AP2/ERF domain
SuperFamilySSF541716.28E-2266125IPR016177DNA-binding domain
PROSITE profilePS5103223.49966124IPR001471AP2/ERF domain
PRINTSPR003673.9E-136778IPR001471AP2/ERF domain
CDDcd000187.44E-2374126No hitNo description
PRINTSPR003673.9E-13106126IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 211 aa     Download sequence    Send to blast
MSSTTTDSDC SYLEQIQQYL LHNDSTILTP PQAFPSPSHD SSSDASVHFE HPSEAHDVNA  60
PPKWRRYRGV RRRPWGKFAA EIRDPKKNGS RVWLGTYVNE EEAALAYDKA AFNMRGQKAK  120
LNFPHLIGSA VQPEPPCLAV SKRSLPESSP PTSPYDSCES KGSKRRKSLV DLLNNLAKNK  180
SQAKVVEMAL EANEVEQWVN ELNDCTLFWC S
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A5e-2863130269ATERF1
3gcc_A5e-2863130269ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator and may be involved in disease resistance pathways (By similarity). Binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways mediated by ethylene, that seems to depend on a protein kinase cascade and to be influenced by methyl-jasmonate. {ECO:0000250, ECO:0000269|PubMed:7756828, ECO:0000269|Ref.2}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN40557.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Highly and transiently expressed in tobacco mosaic virus (TMV) infected leaves. Induced by methyl-jasmonate (MeJA), and by ethephon (ethylene-releasing compound) in buds and to lower extent in leaves. Quickly and transiently induced by salicylic acid (SA). Strongly induced by wounding, independently of ethylene, and through a de-novo-protein-synthesis-independent regulation. Wound induction is reduced by MeJA. Also induced by acetyl salicylic acid (ASA), cycloheximide, auxin (2,4-D), and benzoic acid (BA) but seems to not be influenced by 4-hydroxybenzoic acid (4HBA), thiamine, H(2)O(2) or abscisic acid (ABA). {ECO:0000269|PubMed:7756828, ECO:0000269|PubMed:9725022, ECO:0000269|Ref.2}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1431729e-61BT143172.1 Medicago truncatula clone JCVI-FLMt-5M13 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006602878.11e-158ethylene-responsive transcription factor 1
RefseqXP_028213403.11e-158ethylene-responsive transcription factor 1-like
SwissprotQ404766e-37ERF1_TOBAC; Ethylene-responsive transcription factor 1
TrEMBLA0A445FW891e-156A0A445FW89_GLYSO; Ethylene-responsive transcription factor 1
TrEMBLK7MUN31e-156K7MUN3_SOYBN; Uncharacterized protein
STRINGGLYMA18G48741.11e-157(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF51233157
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G44840.12e-29ethylene-responsive element binding factor 13
Publications ? help Back to Top
  1. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]