PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN40721.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family TCP
Protein Properties Length: 419aa    MW: 46627.1 Da    PI: 9.3898
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN40721.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP144.39e-451022732135
         TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt............ssssasec.eaesssssasnsss 87 
                 ++kkdrhs i+T++g+RdRRvRls+e+a++fFdLqd+LGfdk+s+t+eWL++++k+aikel+++            s+ss+s+c ++ + +s+ +++++
  KHN40721.1 102 PPKKDRHSRIYTSQGLRDRRVRLSIEIARKFFDLQDMLGFDKASNTLEWLFNKSKRAIKELARSkhsnnnsdegakSFSSSSDCdDDCEVVSEIKQKQQ 200
                 78**************************************************************99999999999988888888644444444444444 PP

         TCP  88 g.............................kaaksaakskksqksaasalnlakesrakarararertrekmriknk 135
                 +                              aak+ +k k+    +++  +++kesr+karararert++k  + n+
  KHN40721.1 201 QlitcdaaattphnlqqgldsgdnkspttlMAAKERMKLKR----TQKEPAKMKESREKARARARERTSNKIIMCNV 273
                 466699999999999999****9876544333333333333....333456899****************9766554 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5136934.821104162IPR017887Transcription factor TCP subgroup
PfamPF036342.8E-44104268IPR005333Transcription factor, TCP
PROSITE profilePS5137011.607250267IPR017888CYC/TB1, R domain
Sequence ? help Back to Top
Protein Sequence    Length: 419 aa     Download sequence    Send to blast
MFPYSSNPSP SFPSSSSSYP PFPFLNLENA SASNTLLHDA LSVPYIPTHH NPSSIQEALN  60
NFPVTDHNCG GGGGSGSAMT KPDPNGGGAP QYGISCFLTK KPPKKDRHSR IYTSQGLRDR  120
RVRLSIEIAR KFFDLQDMLG FDKASNTLEW LFNKSKRAIK ELARSKHSNN NSDEGAKSFS  180
SSSDCDDDCE VVSEIKQKQQ QLITCDAAAT TPHNLQQGLD SGDNKSPTTL MAAKERMKLK  240
RTQKEPAKMK ESREKARARA RERTSNKIIM CNVNTNNTGG KVLQDLKKKC PAIENNHTQI  300
MHQSRSSPTH HPHHLVGNET PRDDFNVIEE SIVIKRKLKP SLMSSSDHHH HHHQNLVMPK  360
EPPSFNNNNS EYHPFSNLSP NWDANGSTGR SNFCAIASMN LSTGLQIFGK SWEECINPR
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00215DAPTransfer from AT1G67260Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN40721.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150440.0AP015044.1 Vigna angularis var. angularis DNA, chromosome 11, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003541273.10.0transcription factor CYCLOIDEA
RefseqXP_006593723.10.0transcription factor CYCLOIDEA
RefseqXP_014620978.10.0transcription factor CYCLOIDEA
RefseqXP_028197082.10.0transcription factor CYCLOIDEA-like
RefseqXP_028197083.10.0transcription factor CYCLOIDEA-like
TrEMBLA0A0B2S1X40.0A0A0B2S1X4_GLYSO; Transcription factor TCP1
STRINGGLYMA13G07475.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF17383294
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G67260.25e-29TCP family protein
Publications ? help Back to Top
  1. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]