PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN40954.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family ERF
Protein Properties Length: 223aa    MW: 25431.6 Da    PI: 8.4654
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN40954.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2582.3e-1885135255
         AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                 +y+GVr+++ +g+++AeIrdp++ng  +r++lg++ t+eeA  a++ a+ +++g
  KHN40954.1  85 RYRGVRRRP-WGKFAAEIRDPKKNG--ARIWLGTYETEEEAGLAYDGAAFEMRG 135
                 8********.***********9998..*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000183.69E-3084145No hitNo description
Gene3DG3DSA:3.30.730.107.4E-3185144IPR001471AP2/ERF domain
SMARTSM003801.4E-3585149IPR001471AP2/ERF domain
PfamPF008472.8E-1385135IPR001471AP2/ERF domain
PROSITE profilePS5103223.82885143IPR001471AP2/ERF domain
SuperFamilySSF541714.05E-2285144IPR016177DNA-binding domain
PRINTSPR003677.7E-138697IPR001471AP2/ERF domain
PRINTSPR003677.7E-13125145IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 223 aa     Download sequence    Send to blast
MATTISCDFS SVESIQHYLL ELEHDSNTLM NASNHEICYS PTYNSFPSST TFRLEGVHDA  60
EGSLACKREH PKVEREVHAP PAWKRYRGVR RRPWGKFAAE IRDPKKNGAR IWLGTYETEE  120
EAGLAYDGAA FEMRGSKAKL NFPHLIGSHA PLKPIRVLTK TLKQNLLESD LSYSSASETQ  180
ELKKRKNLAD LLNRLAKNRK QVEVFEMSLH ASNDVNVDQW WSN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A5e-2984143160ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
2gcc_A5e-2984148468ATERF1
3gcc_A5e-2984148468ATERF1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN40954.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0920190.0BT092019.1 Soybean clone JCVI-FLGm-9K2 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028225041.11e-168ethylene-responsive transcription factor 1-like
TrEMBLA0A0B2S9F41e-166A0A0B2S9F4_GLYSO; Ethylene-responsive transcription factor 13
STRINGGLYMA03G26520.11e-160(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF51233157
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G44840.15e-38ethylene-responsive element binding factor 13
Publications ? help Back to Top
  1. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]