PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

KHN40974.1

Organism

Glycine soja

Taxonomic ID

3848

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja

Family

LBD

Protein Properties

Length: 227aa MW: 24398 Da PI: 9.0001

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
KHN40974.1	genome	TCUHK	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	134.2	5e-42	20	119	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallke 99 +CaaCk+lrr+Ca++C+++pyf ++p+kfa+vhk+FGasnv+k+l ++pe +r da++slvyeA+ r+rdPvyG++g i++lqqq+++l++el+++++ KHN40974.1 20 PCAACKLLRRRCAEECPFSPYFSPHEPQKFAAVHKVFGASNVSKMLMEVPEGQRADAANSLVYEANLRIRDPVYGCMGAISALQQQVQRLQVELNATRA 118 7**********************************************************************************************9998 PP DUF260 100 e 100 e KHN40974.1 119 E 119 7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	25.68	19	120	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	3.9E-42	20	117	IPR004883	Lateral organ boundaries, LOB

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0004088	Molecular Function	carbamoyl-phosphate synthase (glutamine-hydrolyzing) activity

Sequence ? help Back to Top
Protein Sequence Length: 227 aa Download sequence Send to blast
MGRKHFYGPT PGTTLNTVTP CAACKLLRRR CAEECPFSPY FSPHEPQKFA AVHKVFGASN 60 VSKMLMEVPE GQRADAANSL VYEANLRIRD PVYGCMGAIS ALQQQVQRLQ VELNATRAEI 120 LKYKYREAAC IISSHHHVAL VSSADAISIA AIPADSSQGL SQPQIQPHPP PPPPKPLPSP 180 PPPKPLPSPS ILLSSLSSSS ASSVYTPPKS TMSLGSISTT ENVPYFV

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	6e-46	13	131	4	122	LOB family transfactor Ramosa2.1
5ly0_B	6e-46	13	131	4	122	LOB family transfactor Ramosa2.1
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	KHN40974.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP015036	1e-136	AP015036.1 Vigna angularis var. angularis DNA, chromosome 3, almost complete sequence, cultivar: Shumari.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_003518338.2	1e-164	LOB domain-containing protein 15 isoform X1
Refseq	XP_006575444.1	1e-164	LOB domain-containing protein 13 isoform X2
Refseq	XP_028215056.1	1e-164	LOB domain-containing protein 15-like isoform X1
Refseq	XP_028215059.1	1e-164	LOB domain-containing protein 13-like isoform X2
Swissprot	Q9AT61	6e-72	LBD13_ARATH; LOB domain-containing protein 13
TrEMBL	A0A445LSZ4	1e-163	A0A445LSZ4_GLYSO; LOB domain-containing protein 13 isoform A
TrEMBL	I1JHK6	1e-163	I1JHK6_SOYBN; Uncharacterized protein
STRING	GLYMA02G40080.2	1e-163	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF2298	34	86

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G30340.1	2e-67	LOB domain-containing protein 13

Publications ? help Back to Top
Qi X, et al. Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing. Nat Commun, 2014. 5: p. 4340 [PMID:25004933] Cho C,Jeon E,Pandey SK,Ha SH,Kim J LBD13 positively regulates lateral root formation in Arabidopsis. Planta, 2019. 249(4): p. 1251-1258 [PMID:30627888]