PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

KHN41047.1

Organism

Glycine soja

Taxonomic ID

3848

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja

Family

C2H2

Protein Properties

Length: 257aa MW: 27964 Da PI: 6.0221

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
KHN41047.1	genome	TCUHK	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	12.9	0.00034	106	128	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C + F ++ L H++ H KHN41047.1 106 FSCNYCQRKFFSSQALGGHQNAH 128 89*****************9988 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	2.99E-6	104	133	No hit	No description
PROSITE profile	PS50157	11.344	106	133	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	108	128	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0044212	Molecular Function	transcription regulatory region DNA binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 257 aa Download sequence Send to blast
MKPNFDLEVE ACAAYESEVS SQVASNVSIQ ETSIGPCSDS LTNISNITNP IGIHPNSDAI 60 SLDLSLNFKN SAPGGRDSIG FSFSSTSESS NEPAAQTTAA TIPRVFSCNY CQRKFFSSQA 120 LGGHQNAHKR ERTLAKRAMR MGFFSERYAN LASLPLHGSF RSLGIKAHSS LHHGFSPTMR 180 CPEIKNNARF DQGYVGHPIF LEDDESDLLW PGSFRQVAEA GDSHQNFILT GSSNLSFTEV 240 NPPVDIDNST PDLTLKL

Functional Description ? help Back to Top
Source	Description
UniProt	Acts as negative regulator of abscisic acid (ABA) signaling during germination and early seedling development. {ECO:0000269\|PubMed:24808098}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	KHN41047.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT093856	0.0	BT093856.1 Soybean clone JCVI-FLGm-17J14 unknown mRNA.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_028215790.1	0.0	zinc finger protein 4-like
Refseq	XP_028215798.1	0.0	zinc finger protein 4-like
Refseq	XP_028215806.1	0.0	zinc finger protein 4-like
Refseq	XP_028215815.1	0.0	zinc finger protein 4-like
Refseq	XP_028215823.1	0.0	zinc finger protein 4-like
Refseq	XP_028215830.1	0.0	zinc finger protein 4-like
Refseq	XP_028215840.1	0.0	zinc finger protein 4-like
Refseq	XP_028215848.1	0.0	zinc finger protein 4-like
Refseq	XP_028215857.1	0.0	zinc finger protein 4-like
Swissprot	Q39263	1e-51	ZFP4_ARATH; Zinc finger protein 4
TrEMBL	A0A445LTI9	0.0	A0A445LTI9_GLYSO; Zinc finger protein 4
STRING	GLYMA02G40960.6	0.0	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1323	31	92

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G66140.1	1e-53	zinc finger protein 4

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Joseph MP, et al. The Arabidopsis ZINC FINGER PROTEIN3 Interferes with Abscisic Acid and Light Signaling in Seed Germination and Plant Development. Plant Physiol., 2014. 165(3): p. 1203-1220 [PMID:24808098] Qi X, et al. Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing. Nat Commun, 2014. 5: p. 4340 [PMID:25004933] Li B, et al. Network-Guided Discovery of Extensive Epistasis between Transcription Factors Involved in Aliphatic Glucosinolate Biosynthesis. Plant Cell, 2018. 30(1): p. 178-195 [PMID:29317470]