PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN41112.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family LBD
Protein Properties Length: 220aa    MW: 24223 Da    PI: 5.998
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN41112.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260122.71.9e-387105198
      DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallk 98 
                 +C aCk+lrrkC++dCv+apyf  +q + +fa+vhk++Gasnv+kll++lp ++r+da+ ++ yeA ar++dP+yG+v++i +lq+q+++l++e+++l+
  KHN41112.1   7 SCGACKFLRRKCTSDCVFAPYFSYDQaSTHFAAVHKIYGASNVSKLLSHLPIQNRSDAAVTISYEALARMQDPIYGCVAHIYALQHQVASLQEEIDALG 105
                 6***********************99779*****************************************************************98876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089122.5646108IPR004883Lateral organ boundaries, LOB
PfamPF031955.9E-377104IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 220 aa     Download sequence    Send to blast
MTGFGSSCGA CKFLRRKCTS DCVFAPYFSY DQASTHFAAV HKIYGASNVS KLLSHLPIQN  60
RSDAAVTISY EALARMQDPI YGCVAHIYAL QHQVASLQEE IDALGNLVAN SSVSVVNCGS  120
VQATINSNNG TQFNILQHDA TRTQYCQNNL ANFLSQEGSA TVFQSLINSQ MDIELPNCTQ  180
VEHPSFGDFN SNPLEQFLSG IDQEMFVNHP WFKHNADIKN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A2e-3631037106LOB family transfactor Ramosa2.1
5ly0_B2e-3631037106LOB family transfactor Ramosa2.1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN41112.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150361e-122AP015036.1 Vigna angularis var. angularis DNA, chromosome 3, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006576098.11e-136LOB domain-containing protein 33
TrEMBLK7KAM41e-163K7KAM4_SOYBN; Uncharacterized protein
STRINGGLYMA02G41710.21e-164(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF91963242
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06080.11e-55LOB domain-containing protein 33
Publications ? help Back to Top
  1. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]