PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN41209.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family HD-ZIP
Protein Properties Length: 723aa    MW: 78776.1 Da    PI: 5.753
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN41209.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox64.41.6e-2049104156
                 TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
    Homeobox   1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                 +++ +++t++q++e+e++F+++++p+ ++r+eL+++lgL+  qVk+WFqN+R+++k
  KHN41209.1  49 KKRYHRHTQHQIQEMEAFFKECPHPDDKQRKELSRELGLEPLQVKFWFQNKRTQMK 104
                 688999***********************************************999 PP
2START223.85.4e-702404601206
                 HHHHHHHHHHHHHHHHC-TT-EEEE....EXCCTTEEEEEEESSS......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EEEEEEEEC CS
       START   1 elaeeaaqelvkkalaeepgWvkss....esengdevlqkfeeskv.....dsgealrasgvvdmvlallveellddkeqWdetla....kaetlevis 86 
                 ela +a++el+ +a+ +ep+W +      +++n+de++++f+++ +     ++ +a+r+++vv+m++++lve+l+d++ qW++ +     +a+tlev+s
  KHN41209.1 240 ELAVAAMEELIGMAQMGEPLWLTTLdgtsTMLNEDEYIRSFPRGIGpkpsgFKCQASRETAVVIMNHVNLVEILMDVN-QWSTVFSgivsRAMTLEVLS 337
                 57899**************************************999********************************.******************** PP

                 TT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXXH CS
       START  87 sg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghskvtwvehvdlkgrlph 178
                 +g      galq+m+aelq+++plvp R+++fvRy++q+g+g+w++vdvS+d+ ++ p    ++R++++pSg+li++++ng+skvtwvehv++++r +h
  KHN41209.1 338 TGvagnynGALQVMTAELQLPTPLVPtRESYFVRYCKQHGDGTWAVVDVSLDNLRPSP----SARCRRRPSGCLIQEMPNGYSKVTWVEHVEVDDRGVH 432
                 ********************************************************99....5************************************ PP

                 HHHHHHHHHHHHHHHHHHHHHTXXXXXX CS
       START 179 wllrslvksglaegaktwvatlqrqcek 206
                 +l+++lv+sg+a+gak+ vatl+rqce+
  KHN41209.1 433 NLYKQLVSSGHAFGAKRLVATLDRQCER 460
                 **************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.3E-2328104IPR009057Homeodomain-like
SuperFamilySSF466891.5E-1938106IPR009057Homeodomain-like
PROSITE profilePS5007116.92546106IPR001356Homeobox domain
SMARTSM003891.2E-1947110IPR001356Homeobox domain
PfamPF000464.0E-1849104IPR001356Homeobox domain
CDDcd000862.44E-1949107No hitNo description
PROSITE patternPS00027081104IPR017970Homeobox, conserved site
PROSITE profilePS5084842.932231463IPR002913START domain
SuperFamilySSF559613.85E-35231462No hitNo description
CDDcd088752.47E-127235459No hitNo description
SMARTSM002348.4E-64240460IPR002913START domain
PfamPF018524.9E-59241460IPR002913START domain
Gene3DG3DSA:3.30.530.201.3E-5333429IPR023393START-like domain
SuperFamilySSF559615.5E-26479715No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0008289Molecular Functionlipid binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 723 aa     Download sequence    Send to blast
MDALEMGQNT PESEIPRIRE DEFDSATKSG SENHEGASGE DQDPRPNKKK RYHRHTQHQI  60
QEMEAFFKEC PHPDDKQRKE LSRELGLEPL QVKFWFQNKR TQMKTQHERH ENTNLRTENE  120
KLRADNMRYR EALSNASCPN CGGPTAIGEM SFDEHHLRLE NARLREEIDR ISAIAAKYVG  180
KPVVNYSNIS PSLPPRPLEI GVGGAGFGGQ PGIGVDMYGA GDLLRSISGP TEADKPIIIE  240
LAVAAMEELI GMAQMGEPLW LTTLDGTSTM LNEDEYIRSF PRGIGPKPSG FKCQASRETA  300
VVIMNHVNLV EILMDVNQWS TVFSGIVSRA MTLEVLSTGV AGNYNGALQV MTAELQLPTP  360
LVPTRESYFV RYCKQHGDGT WAVVDVSLDN LRPSPSARCR RRPSGCLIQE MPNGYSKVTW  420
VEHVEVDDRG VHNLYKQLVS SGHAFGAKRL VATLDRQCER LASAMATNIP TVDVGVITNQ  480
EGRKSMMKLA ERMVISFCAG VSASTAHTWT TLSGTGADDV RVMTRKSVDD PGRPPGIVLS  540
AATSFWLPVP PKRVFDFLRD ENSRNEWDIL SNGGVVQEMA HIANGRDTGN CVSLLRVNSA  600
NSSQSNMLIL QESCTDSTGS FVIYAPVDIV AMNVVLNGGD PDYVALLPSG FAILPDGTTS  660
HGSGGGVIGE TSPSSGSLLT VAFQILVDSV PTAKLSLGSV ATVNNLIACT VERIKASLSG  720
EPA
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN41209.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014632311.10.0homeobox-leucine zipper protein HDG2 isoform X1
SwissprotQ94C370.0HDG2_ARATH; Homeobox-leucine zipper protein HDG2
TrEMBLA0A445KG220.0A0A445KG22_GLYSO; Homeobox-leucine zipper protein HDG2 isoform C
STRINGGLYMA06G46000.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF15083499
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G05230.40.0homeodomain GLABROUS 2
Publications ? help Back to Top
  1. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]