PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

KHN41251.1

Organism

Glycine soja

Taxonomic ID

3848

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja

Family

YABBY

Protein Properties

Length: 188aa MW: 21127.1 Da PI: 8.2991

Description

YABBY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
KHN41251.1	genome	TCUHK	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	YABBY	224.5	2.9e-69	6	162	5	170
YABBY 5 ssseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkeelleelkveeenlksnvekeesastsvsseklse 103 ++e+vCyv+CnfCntilavsvP++sl+++vtvrCGhC++llsvn+ + q+ + ++ +s +++ l +ee + +e +s+s+ ++ + e KHN41251.1 6 MATERVCYVHCNFCNTILAVSVPYSSLLTIVTVRCGHCANLLSVNMGASLQAFPPQDP--QS----QKQLLSFEEPSSC--KELGSSSSKCNKIAPFHE 96 689************************************************99996..22....2222333332222..222233333333444568 PP YABBY 104 nedeevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihfgl 170 ++e pr+pp irP ekr rvPsaynrfikeeiqrikasnPdishreafs aaknWahfP+ihfgl KHN41251.1 97 AVEHEQPRIPP-IRPTEKRHRVPSAYNRFIKEEIQRIKASNPDISHREAFSSAAKNWAHFPHIHFGL 162 889999999.9****************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04690	4.7E-73	7	162	IPR006780	YABBY protein
SuperFamily	SSF47095	1.57E-7	107	155	IPR009071	High mobility group box domain
Gene3D	G3DSA:1.10.30.10	1.1E-4	115	156	IPR009071	High mobility group box domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0007275	Biological Process	multicellular organism development
GO:0010158	Biological Process	abaxial cell fate specification

Sequence ? help Back to Top
Protein Sequence Length: 188 aa Download sequence Send to blast
MSMEMMATER VCYVHCNFCN TILAVSVPYS SLLTIVTVRC GHCANLLSVN MGASLQAFPP 60 QDPQSQKQLL SFEEPSSCKE LGSSSSKCNK IAPFHEAVEH EQPRIPPIRP TEKRHRVPSA 120 YNRFIKEEIQ RIKASNPDIS HREAFSSAAK NWAHFPHIHF GLKNLKLDGN KQEKLDQGEG 180 AEKSNGFY

Functional Description ? help Back to Top
Source	Description
UniProt	Involved in the abaxial cell fate determination during embryogenesis and organogenesis. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	KHN41251.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT090571	0.0	BT090571.1 Soybean clone JCVI-FLGm-4H4 unknown mRNA.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	NP_001344735.1	1e-140	protein YABBY 9 isoform 2
Refseq	XP_025984467.1	1e-140	transcription factor YABBY9 isoform X4
Swissprot	Q9XFB0	8e-77	YAB2_ARATH; Putative axial regulator YABBY 2
TrEMBL	A0A445KG97	1e-138	A0A445KG97_GLYSO; Putative axial regulator YABBY 2 isoform A
TrEMBL	I1KFH5	1e-138	I1KFH5_SOYBN; Uncharacterized protein
STRING	GLYMA12G10210.3	1e-124	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1124	34	112

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G08465.1	3e-76	YABBY family protein

Publications ? help Back to Top
Qi X, et al. Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing. Nat Commun, 2014. 5: p. 4340 [PMID:25004933] Sacharowski SP, et al. SWP73 Subunits of Arabidopsis SWI/SNF Chromatin Remodeling Complexes Play Distinct Roles in Leaf and Flower Development. Plant Cell, 2015. 27(7): p. 1889-906 [PMID:26106148]