PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

KHN41427.1

Organism

Glycine soja

Taxonomic ID

3848

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja

Family

HD-ZIP

Protein Properties

Length: 200aa MW: 22959.7 Da PI: 7.2322

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
KHN41427.1	genome	TCUHK	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	62.9	4.9e-20	28	80	4	56
-SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 4 RttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 + ++t++q+ +Le++F +n+++ e++ +LA++lgL+ rqV +W+qN+Ra++k KHN41427.1 28 KKRLTEDQVAILEKCFSSNMKLEPEQKFHLANQLGLPPRQVAIWYQNKRARWK 80 5679************************************************9 PP
2	HD-ZIP_I/II	114.2	8.2e-37	27	118	2	93
HD-ZIP_I/II 2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 +k+rl+++qv++LE++F+++ kLepe+K +la++Lgl prqva+W+qn+RAR+kt+ lE+d+ +L+++++++++e+++Lek+ve+L++elk+ KHN41427.1 27 NKKRLTEDQVAILEKCFSSNMKLEPEQKFHLANQLGLPPRQVAIWYQNKRARWKTQSLEVDHGVLQARLENVVAEKKQLEKDVERLKAELKK 118 79***************************************************************************************997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	1.55E-18	14	83	IPR009057	Homeodomain-like
PROSITE profile	PS50071	16.18	22	82	IPR001356	Homeobox domain
SMART	SM00389	1.0E-16	24	86	IPR001356	Homeobox domain
CDD	cd00086	6.39E-16	28	83	No hit	No description
Pfam	PF00046	2.5E-17	28	80	IPR001356	Homeobox domain
Gene3D	G3DSA:1.10.10.60	4.0E-19	29	86	IPR009057	Homeodomain-like
PROSITE pattern	PS00027	0	57	80	IPR017970	Homeobox, conserved site

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0009637	Biological Process	response to blue light
GO:0009646	Biological Process	response to absence of light
GO:0005634	Cellular Component	nucleus
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 200 aa Download sequence Send to blast
MGDFIFSFKT QQQEHHAHHQ RAKHNNNKKR LTEDQVAILE KCFSSNMKLE PEQKFHLANQ 60 LGLPPRQVAI WYQNKRARWK TQSLEVDHGV LQARLENVVA EKKQLEKDVE RLKAELKKAQ 120 EMLLITNSVK GGDHNNNNAC EFSTSFEEGG SSGVVLDDAT YHHHHECWQS GGEVMQVEEL 180 YAYFVGANYG TGLHEKGHKI

Cis-element ? help Back to Top
Source	Link
PlantRegMap	KHN41427.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC235414	0.0	AC235414.1 Glycine max strain Williams 82 clone GM_WBb0131H01, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_003527218.1	1e-149	homeobox-leucine zipper protein ATHB-52
Refseq	XP_028237640.1	1e-149	homeobox-leucine zipper protein ATHB-52-like
TrEMBL	A0A0B2SAY1	1e-148	A0A0B2SAY1_GLYSO; Homeobox-leucine zipper protein ATHB-52
TrEMBL	I1KDP7	1e-148	I1KDP7_SOYBN; Uncharacterized protein
STRING	GLYMA06G35050.1	1e-148	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF11011	22	39

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G53980.1	1e-35	homeobox protein 52

Publications ? help Back to Top
Qi X, et al. Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing. Nat Commun, 2014. 5: p. 4340 [PMID:25004933]