PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN41496.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family bHLH
Protein Properties Length: 205aa    MW: 23510.1 Da    PI: 9.3671
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN41496.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH38.71.8e-123180455
                HHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
         HLH  4 ahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55
                +h+e Er+RR+++ +   +Lr+llP       ++K s ++ + +A++YI++Lq
  KHN41496.1 31 MHKETERQRRQEMGNLCTTLRSLLPLeY---IKGKRSTSDHVNEAMNYINHLQ 80
                7*************************77...*********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000832.94E-112584No hitNo description
SuperFamilySSF474598.77E-162696IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088813.6872779IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.5E-112995IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000106.1E-103180IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003539.9E-53385IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 205 aa     Download sequence    Send to blast
MARRNSGKHL LVGEKEDYNK LAMDDENKKW MHKETERQRR QEMGNLCTTL RSLLPLEYIK  60
GKRSTSDHVN EAMNYINHLQ SKVKQLQAKR DELVKVSNLM SNICPENIES SSTIHLPPLV  120
SIHPFPGGLE IMCSYSFGKS LFPMSRVLDI LLKEGLNVVS TTSIRRDGRF IHTIRSEYPI  180
HSNMAGTDYT ELQMKLMEII SSSSK
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN41496.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0927390.0BT092739.1 Soybean clone JCVI-FLGm-11L13 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006598722.11e-151helix-loop-helix domain-containing protein isoform X1
RefseqXP_028206875.11e-151transcription factor bHLH36-like isoform X1
TrEMBLA0A0B2S4451e-150A0A0B2S445_GLYSO; Transcription factor bHLH126
TrEMBLI1MQ571e-150I1MQ57_SOYBN; Uncharacterized protein
STRINGGLYMA16G32610.31e-150(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF79233125
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G25410.17e-36bHLH family protein
Publications ? help Back to Top
  1. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]