PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN41667.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family M-type_MADS
Protein Properties Length: 186aa    MW: 20937.9 Da    PI: 9.4117
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN41667.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF65.84.3e-211357549
                SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
      SRF-TF  5 nksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                +   rqvtfskRr+g++KKA+ELS+LC+ae+a+++fs  +k y +
  KHN41667.1 13 DPNTRQVTFSKRRTGLFKKANELSILCGAEIAIVVFSIGNKPYSF 57
                5568*********************************98887766 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006626.1161IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.44E-25173IPR002100Transcription factor, MADS-box
SMARTSM004322.9E-32160IPR002100Transcription factor, MADS-box
PRINTSPR004041.6E-19323IPR002100Transcription factor, MADS-box
PfamPF003191.2E-231257IPR002100Transcription factor, MADS-box
PRINTSPR004041.6E-192338IPR002100Transcription factor, MADS-box
PRINTSPR004041.6E-193859IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 186 aa     Download sequence    Send to blast
MGRRKIEIAT LKDPNTRQVT FSKRRTGLFK KANELSILCG AEIAIVVFSI GNKPYSFGHP  60
GVDVIAAKFL QEAANSSDAK QIDAQGNNPS NELGDMNRLN QQLSDVQTQI LEEEKKGAEH  120
DERLKQHQVT QLSQYKELQA SYLELQHRVK DYVNAIEVSE CMILLAQEPV VGITKQMTAT  180
KRRKKN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6byy_A5e-17169169MEF2 CHIMERA
6byy_B5e-17169169MEF2 CHIMERA
6byy_C5e-17169169MEF2 CHIMERA
6byy_D5e-17169169MEF2 CHIMERA
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN41667.1
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028233814.11e-137agamous-like MADS-box protein AGL29
TrEMBLA0A0B2SBN81e-135A0A0B2SBN8_GLYSO; Agamous-like MADS-box protein AGL29
STRINGGLYMA05G35820.11e-132(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF24242979
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G34440.13e-38AGAMOUS-like 29
Publications ? help Back to Top
  1. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]