PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

KHN41697.1

Organism

Glycine soja

Taxonomic ID

3848

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja

Family

GRAS

Protein Properties

Length: 742aa MW: 81406.4 Da PI: 6.3676

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
KHN41697.1	genome	TCUHK	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	312.5	9.4e-96	386	741	2	374
GRAS 2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaNq 100 +e+L+++Ae +++g+lela+ +Larl+++ sp g+p+qR+a+yf+eAL+ l++ + ++ + s++ ++ a+k fse+sP+l+f+++t+Nq KHN41697.1 386 TEQLFKAAELIDAGNLELAHGILARLNHQLSPIGKPFQRAAFYFKEALQLLLHS--NANN---SSFTFSPTGLLLKIGAYKSFSEISPVLQFANFTCNQ 479 689************************************************9..3333...44444444599********************* PP GRAS 101 aIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkpg 199 a+leav+g +r+HiiDfdi+ G+QW +++q+La R++g+p+l+iT+++sp+++++ el+ t+e L+++A el++pfe ++l ++l++ + ++ KHN41697.1 480 ALLEAVKGFDRIHIIDFDIGLGGQWSSFMQELALRNGGAPELKITAFVSPSHHDEIELSFTQESLKQYAGELRMPFELEILSLESLNSA-SWPQPLRDC 577 ****************************************************************************966666655.344457889 PP GRAS 200 EalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsl.eaklpreseerikvErellgreivnv 297 a++Vn+ + ++ + +s+ + vL++vk+l Pk+vv ++ +d+++++F ++++ al+ ys l++sl ++++ + + +++E+ +l+++ +++ KHN41697.1 578 KAVVVNMPIGSFSNY------PSYLPLVLRFVKQLMPKIVVTLDRSCDRTDAPFPQHLIFALQSYSGLLESLdAVNV--HPDVLQMIEKYYLQPSMEKL 668 999999999887776......677788*****************************************55554..5578899*********** PP GRAS 298 vacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374 v ++ +e++ W++ l ++GF+p+++s+++++qa++l+++++s+g++ve+++ slvl+W+++ L+svS Wr KHN41697.1 669 VLGRHGL----QERALPWKNLLLSSGFSPLTFSNFTESQAECLVQRTPSKGFHVEKRQSSLVLCWQRKDLISVSTWR 741 998887....88899***********************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	44.047	359	721	IPR005202	Transcription factor GRAS
Pfam	PF03514	3.3E-93	386	741	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 742 aa Download sequence Send to blast
MKAVPLPYQE FRGNGVLDFA SGAAAAVSDS LLLPQQEQFL QRWNPQRENF CYVGIEPSSG 60 LDRKRKTSSP PTSSSTLSSS RASSGSTDST TGTATATAAE KENNPPQAGL EVGQARCGLG 120 MEDWESVLSE SPGQDHSILK LIMGDIEDPS VGLTKLLQGG SGSQDVEFNG VGVGFGLVDQ 180 SSVLFPIPSV NFVSSSSSID PSGTGNCSDF PFNSQTNVSP NVPRVGSGVN PNTTGFPASA 240 SNLSPVSLPQ GVFLPQQQQQ HHPPIEPLDE KLQVLNPQFI LNQNQSQFMP NAGLVLPLTY 300 GQLQENHQLL PQPPAKRLNC GPNYQVPKTP FLDSGQELLL RRQQQQLQLL PHHLLQRPSM 360 VVAPKQKMVN SGGQDLATHQ LQQAITEQLF KAAELIDAGN LELAHGILAR LNHQLSPIGK 420 PFQRAAFYFK EALQLLLHSN ANNSSFTFSP TGLLLKIGAY KSFSEISPVL QFANFTCNQA 480 LLEAVKGFDR IHIIDFDIGL GGQWSSFMQE LALRNGGAPE LKITAFVSPS HHDEIELSFT 540 QESLKQYAGE LRMPFELEIL SLESLNSASW PQPLRDCKAV VVNMPIGSFS NYPSYLPLVL 600 RFVKQLMPKI VVTLDRSCDR TDAPFPQHLI FALQSYSGLL ESLDAVNVHP DVLQMIEKYY 660 LQPSMEKLVL GRHGLQERAL PWKNLLLSSG FSPLTFSNFT ESQAECLVQR TPSKGFHVEK 720 RQSSLVLCWQ RKDLISVSTW RC

Sequence ? help Back to Top

Protein Sequence Length: 742 aa Download sequence Send to blast

MKAVPLPYQE FRGNGVLDFA SGAAAAVSDS LLLPQQEQFL QRWNPQRENF CYVGIEPSSG  60
LDRKRKTSSP PTSSSTLSSS RASSGSTDST TGTATATAAE KENNPPQAGL EVGQARCGLG  120
MEDWESVLSE SPGQDHSILK LIMGDIEDPS VGLTKLLQGG SGSQDVEFNG VGVGFGLVDQ  180
SSVLFPIPSV NFVSSSSSID PSGTGNCSDF PFNSQTNVSP NVPRVGSGVN PNTTGFPASA  240
SNLSPVSLPQ GVFLPQQQQQ HHPPIEPLDE KLQVLNPQFI LNQNQSQFMP NAGLVLPLTY  300
GQLQENHQLL PQPPAKRLNC GPNYQVPKTP FLDSGQELLL RRQQQQLQLL PHHLLQRPSM  360
VVAPKQKMVN SGGQDLATHQ LQQAITEQLF KAAELIDAGN LELAHGILAR LNHQLSPIGK  420
PFQRAAFYFK EALQLLLHSN ANNSSFTFSP TGLLLKIGAY KSFSEISPVL QFANFTCNQA  480
LLEAVKGFDR IHIIDFDIGL GGQWSSFMQE LALRNGGAPE LKITAFVSPS HHDEIELSFT  540
QESLKQYAGE LRMPFELEIL SLESLNSASW PQPLRDCKAV VVNMPIGSFS NYPSYLPLVL  600
RFVKQLMPKI VVTLDRSCDR TDAPFPQHLI FALQSYSGLL ESLDAVNVHP DVLQMIEKYY  660
LQPSMEKLVL GRHGLQERAL PWKNLLLSSG FSPLTFSNFT ESQAECLVQR TPSKGFHVEK  720
RQSSLVLCWQ RKDLISVSTW RC

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3g_A	8e-30	391	740	25	378	Protein SCARECROW
5b3h_A	8e-30	391	740	24	377	Protein SCARECROW
5b3h_D	8e-30	391	740	24	377	Protein SCARECROW
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	KHN41697.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP015037	0.0	AP015037.1 Vigna angularis var. angularis DNA, chromosome 4, almost complete sequence, cultivar: Shumari.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_014628593.1	0.0	scarecrow-like protein 6
Refseq	XP_028189427.1	0.0	scarecrow-like protein 6
TrEMBL	A0A445I249	0.0	A0A445I249_GLYSO; Scarecrow-like protein 6 isoform A
STRING	GLYMA11G17490.1	0.0	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF3183	31	70

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G00150.1	1e-134	GRAS family protein