PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN41711.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family HD-ZIP
Protein Properties Length: 197aa    MW: 22609.5 Da    PI: 9.1472
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN41711.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox56.26e-183791256
                T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
    Homeobox  2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
                rk+ +++keq   Lee F+++ +++ +++  LAk+l+L  rqV vWFqNrRa+ k
  KHN41711.1 37 RKKLRLSKEQSAFLEESFKEHTTLNPKQKLALAKQLNLRPRQVEVWFQNRRARTK 91
                778899***********************************************98 PP
2HD-ZIP_I/II128.62.6e-4137127192
  HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92 
                  +kk+rlskeq+++LEesF+e+++L+p++K +la++L+l+prqv+vWFqnrRARtk+kq+E+d+e+Lkr++++l+een+rL+ke +eLr +lk
   KHN41711.1  37 RKKLRLSKEQSAFLEESFKEHTTLNPKQKLALAKQLNLRPRQVEVWFQNRRARTKLKQTEVDCEYLKRCCETLTEENRRLQKELQELR-ALK 127
                  69*************************************************************************************9.555 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.603.3E-173096IPR009057Homeodomain-like
PROSITE profilePS5007117.1513393IPR001356Homeobox domain
SuperFamilySSF466892.22E-1834102IPR009057Homeodomain-like
SMARTSM003891.3E-153597IPR001356Homeobox domain
PfamPF000461.9E-153791IPR001356Homeobox domain
CDDcd000861.01E-133794No hitNo description
PROSITE patternPS0002706891IPR017970Homeobox, conserved site
PfamPF021833.1E-1193127IPR003106Leucine zipper, homeobox-associated
SMARTSM003404.5E-2693136IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 197 aa     Download sequence    Send to blast
MDFCTRNCNA EFGGRNKREQ QEAEGRASDD DENGSTRKKL RLSKEQSAFL EESFKEHTTL  60
NPKQKLALAK QLNLRPRQVE VWFQNRRART KLKQTEVDCE YLKRCCETLT EENRRLQKEL  120
QELRALKTSQ PFYMQLPATT LTMCPSCERV ATNSTTTNQT TTVNNNASQI PVELSLSKPR  180
ILPFPNGQAQ AHQIASS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
13541TRKKLRL
28593RRARTKLKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN41711.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150411e-104AP015041.1 Vigna angularis var. angularis DNA, chromosome 8, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003518045.11e-142homeobox-leucine zipper protein HOX11
RefseqXP_028208911.11e-142homeobox-leucine zipper protein HOX11-like
SwissprotP466653e-81HAT14_ARATH; Homeobox-leucine zipper protein HAT14
TrEMBLA0A0B2S4S41e-142A0A0B2S4S4_GLYSO; Homeobox-leucine zipper protein HAT14
TrEMBLA0A0R0KY171e-141A0A0R0KY17_SOYBN; Uncharacterized protein
TrEMBLA0A445LQ251e-141A0A445LQ25_GLYSO; Homeobox-leucine zipper protein HAT14
STRINGGLYMA02G28860.11e-142(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF23353382
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06710.14e-66homeobox from Arabidopsis thaliana
Publications ? help Back to Top
  1. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]