PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

KHN41837.1

Organism

Glycine soja

Taxonomic ID

3848

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja

Family

SBP

Protein Properties

Length: 146aa MW: 16298.2 Da PI: 8.5084

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
KHN41837.1	genome	TCUHK	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	125.1	2.9e-39	56	131	2	77
-SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S-- CS SBP 2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkq 77 Cq+++C ++ls ak+y+rrhkvCe h+kapvvlvs ++qrfCqqCs+fhel efD++krsCr+ La+hnerrrk++ KHN41837.1 56 CQADECGVNLSMAKSYNRRHKVCERHAKAPVVLVSSIRQRFCQQCSKFHELAEFDDTKRSCRKTLAGHNERRRKAR 131 *************************************************************************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:4.10.1100.10	3.7E-30	49	117	IPR004333	Transcription factor, SBP-box
PROSITE profile	PS51141	29.308	53	130	IPR004333	Transcription factor, SBP-box
SuperFamily	SSF103612	7.98E-36	55	134	IPR004333	Transcription factor, SBP-box
Pfam	PF03110	1.6E-31	56	129	IPR004333	Transcription factor, SBP-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 146 aa Download sequence Send to blast
MAKTPSEEER EMDNGNDEEG GEGEVGAKMV QNIKIKLVCG KDSGSRTASS SSHSFCQADE 60 CGVNLSMAKS YNRRHKVCER HAKAPVVLVS SIRQRFCQQC SKFHELAEFD DTKRSCRKTL 120 AGHNERRRKA RIDVSLGGGE QHQSHF

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ul4_A	7e-31	47	129	2	84	squamosa promoter binding protein-like 4
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Trans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3' (By similarity). May be involved in panicle development. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	KHN41837.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Negatively regulated by microRNAs miR156b and miR156h. {ECO:0000305\|PubMed:16861571}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP015043	4e-56	AP015043.1 Vigna angularis var. angularis DNA, chromosome 10, almost complete sequence, cultivar: Shumari.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_003538904.1	1e-105	squamosa promoter-binding-like protein 3 isoform X1
Refseq	XP_028187540.1	1e-105	squamosa promoter-binding-like protein 3
Swissprot	Q6Z461	6e-36	SPL13_ORYSJ; Squamosa promoter-binding-like protein 13
TrEMBL	A0A445HYY1	1e-103	A0A445HYY1_GLYSO; Squamosa promoter-binding-like protein 13
TrEMBL	K7LNN2	1e-103	K7LNN2_SOYBN; Uncharacterized protein
STRING	GLYMA11G08905.1	1e-104	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF535	34	153

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G15270.1	5e-35	squamosa promoter binding protein-like 5

Publications ? help Back to Top
Qi X, et al. Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing. Nat Commun, 2014. 5: p. 4340 [PMID:25004933]