PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN41927.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family MIKC_MADS
Protein Properties Length: 233aa    MW: 27226.3 Da    PI: 9.3817
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN41927.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF94.16.3e-30959151
                S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
      SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                k ien +nrqvt+skRrngi+KKA+ELSvLCda+v++i+fs+++k++ey+s
  KHN41927.1  9 KLIENPTNRQVTYSKRRNGIFKKAHELSVLCDAKVSLIMFSKNNKMHEYIS 59
                569**********************************************86 PP
2K-box66.49.7e-2376171698
       K-box   6 gks.leeakaeslqqelakLkkeienLqreqRhllGedL..esLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkl 98 
                 g   l+ +++e++ ++l+kL + +++L+r++Rh++Ge+L  +++s+++L+ Le++L +s+ kiR++K +++++ +++ +kk k+l++ n++L  +l
  KHN41927.1  76 GDIdLWRSHYEKMLENLKKLIDINNKLRRQIRHRIGEGLdmDDMSFQQLRTLEEDLVSSIGKIRERKFHVIKTRTDTCRKKVKSLEQMNRDLLFEL 171
                 43359********************************763369***********************************************997665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006631.497161IPR002100Transcription factor, MADS-box
SMARTSM004322.8E-41160IPR002100Transcription factor, MADS-box
CDDcd002656.05E-38277No hitNo description
SuperFamilySSF554558.63E-35295IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PRINTSPR004042.7E-27323IPR002100Transcription factor, MADS-box
PfamPF003193.5E-251157IPR002100Transcription factor, MADS-box
PRINTSPR004042.7E-272338IPR002100Transcription factor, MADS-box
PRINTSPR004042.7E-273859IPR002100Transcription factor, MADS-box
PfamPF014863.9E-1883171IPR002487Transcription factor, K-box
PROSITE profilePS5129713.59885177IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 233 aa     Download sequence    Send to blast
MGRGKIEIKL IENPTNRQVT YSKRRNGIFK KAHELSVLCD AKVSLIMFSK NNKMHEYISP  60
GLTTKRIIDQ YQKTLGDIDL WRSHYEKMLE NLKKLIDINN KLRRQIRHRI GEGLDMDDMS  120
FQQLRTLEED LVSSIGKIRE RKFHVIKTRT DTCRKKVKSL EQMNRDLLFE LEKCAIHPQF  180
ILHDEGDEES AVALANGAST LYAFCHQHHS HLNLPSHHSH GEEPFKTDDL RLA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6byy_A1e-15162162MEF2 CHIMERA
6byy_B1e-15162162MEF2 CHIMERA
6byy_C1e-15162162MEF2 CHIMERA
6byy_D1e-15162162MEF2 CHIMERA
6bz1_A1e-15162162MEF2 CHIMERA
6bz1_B1e-15162162MEF2 CHIMERA
6bz1_C1e-15162162MEF2 CHIMERA
6bz1_D1e-15162162MEF2 CHIMERA
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in flower development. {ECO:0000250|UniProtKB:Q0HA25}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN41927.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0942830.0BT094283.1 Soybean clone JCVI-FLGm-14H3 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006590707.11e-174floral homeotic protein DEFICIENS isoform X4
RefseqXP_028189014.11e-174floral homeotic protein DEFICIENS-like isoform X4
SwissprotQ003J21e-94TM6_VITVI; Agamous-like MADS-box protein TM6
TrEMBLA0A0R0HN961e-172A0A0R0HN96_SOYBN; Uncharacterized protein
STRINGGLYMA11G07820.11e-171(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF27353375
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54340.12e-66MIKC_MADS family protein
Publications ? help Back to Top
  1. Jaillon O, et al.
    The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla.
    Nature, 2007. 449(7161): p. 463-7
    [PMID:17721507]
  2. Díaz-Riquelme J,Lijavetzky D,Martínez-Zapater JM,Carmona MJ
    Genome-wide analysis of MIKCC-type MADS box genes in grapevine.
    Plant Physiol., 2009. 149(1): p. 354-69
    [PMID:18997115]
  3. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]
  4. Grimplet J,Martínez-Zapater JM,Carmona MJ
    Structural and functional annotation of the MADS-box transcription factor family in grapevine.
    BMC Genomics, 2016. 17: p. 80
    [PMID:26818751]