PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

KHN41937.1

Organism

Glycine soja

Taxonomic ID

3848

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja

Family

SRS

Protein Properties

Length: 205aa MW: 22315.8 Da PI: 7.2034

Description

SRS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
KHN41937.1	genome	TCUHK	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF702	172.3	2.4e-53	1	140	22	153
DUF702 22 eRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasa........aeaaskrkrelkskkqsalsstklssaeskkeletsslPeevsse 112 +RCRtCCksrgfdC+thvkstWvpa++rrer qql+a+++++++++ + +kr+r + +++s l++t+ +s+ s++ le ++P+ v+s+ KHN41937.1 1 MRCRTCCKSRGFDCQTHVKSTWVPASRRRERLQQLSALQQHQQQQQtlepassaGGDLPKRHRA-RDHHHSPLACTRFPSNPSSSGLEEVNFPAVVRSA 98 7********************************99999988888899986655555666666.47889999********************** PP DUF702 113 avfrcvrvssvdd.geeelaYqtavsigGhvfkGiLydqGle 153 a frcvrvss+d+ +eee+aY tav+i+GhvfkGiLyd+G+e KHN41937.1 99 AEFRCVRVSSMDEeAEEEYAYSTAVNIAGHVFKGILYDYGPE 140 ********967889********************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
TIGRFAMs	TIGR01623	8.9E-17	1	28	IPR006510	Zinc finger, lateral root primordium type 1
Pfam	PF05142	7.7E-52	1	140	IPR007818	Protein of unknown function DUF702
TIGRFAMs	TIGR01624	5.5E-24	91	139	IPR006511	Lateral Root Primordium type 1, C-terminal

Sequence ? help Back to Top
Protein Sequence Length: 205 aa Download sequence Send to blast
MRCRTCCKSR GFDCQTHVKS TWVPASRRRE RLQQLSALQQ HQQQQQTLEP ASSAGGDLPK 60 RHRARDHHHS PLACTRFPSN PSSSGLEEVN FPAVVRSAAE FRCVRVSSMD EEAEEEYAYS 120 TAVNIAGHVF KGILYDYGPE GMNTNYMDAV AAAGESSSTG VGALNLTTGA IVSEPLGVDP 180 SSLYPAPLNS FMPGSGTQFF PHPRS

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that binds DNA on 5'-ACTCTAC-3' and promotes auxin homeostasis-regulating gene expression (e.g. YUC genes), as well as genes affecting stamen development, cell expansion and timing of flowering. Synergistically with other SHI-related proteins, regulates gynoecium, stamen and leaf development in a dose-dependent manner, controlling apical-basal patterning. Promotes style and stigma formation, and influences vascular development during gynoecium development. May also have a role in the formation and/or maintenance of the shoot apical meristem (SAM). {ECO:0000269\|PubMed:16740146}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	KHN41937.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_003538866.1	1e-150	protein SHI RELATED SEQUENCE 1
Refseq	XP_028187521.1	1e-150	protein SHI RELATED SEQUENCE 1-like
Swissprot	Q9LQZ5	1e-56	SRS5_ARATH; Protein SHI RELATED SEQUENCE 5
TrEMBL	A0A445HY59	1e-149	A0A445HY59_GLYSO; Protein SHI RELATED SEQUENCE 1
TrEMBL	I1LHX0	1e-149	I1LHX0_SOYBN; Uncharacterized protein
STRING	GLYMA11G07710.1	1e-149	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF882	34	125

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G75520.1	6e-47	SHI-related sequence 5

Publications ? help Back to Top
Qi X, et al. Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing. Nat Commun, 2014. 5: p. 4340 [PMID:25004933] Estornell LH,Landberg K,Cierlik I,Sundberg E SHI/STY Genes Affect Pre- and Post-meiotic Anther Processes in Auxin Sensing Domains in Arabidopsis. Front Plant Sci, 2018. 9: p. 150 [PMID:29491878]