PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

KHN42008.1

Organism

Glycine soja

Taxonomic ID

3848

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja

Family

HD-ZIP

Protein Properties

Length: 215aa MW: 25118.3 Da PI: 6.9546

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
KHN42008.1	genome	TCUHK	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	60	3.8e-19	57	111	3	57
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 k++++++ q++ Le+ F ++r++ e++ +LA++lgL+ rqV vWFqNrRa++k+ KHN42008.1 57 KKRKLSEVQVNLLEQNFGNERKLESERKDRLAMELGLDPRQVAVWFQNRRARWKN 111 567999***********************************************95 PP
2	HD-ZIP_I/II	113.5	1.3e-36	56	148	1	93
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 +kkr+ls+ qv+lLE++F +e+kLe+erK +la eLgl+prqvavWFqnrRAR+k+k+lE++y++Lk++++a e++ Le+ev +L+e+l+e KHN42008.1 56 NKKRKLSEVQVNLLEQNFGNERKLESERKDRLAMELGLDPRQVAVWFQNRRARWKNKKLEEEYSSLKKNHEATLLEKCCLESEVLKLKEQLSE 148 59****************************************************************************************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50071	17.086	52	112	IPR001356	Homeobox domain
SMART	SM00389	2.2E-16	55	116	IPR001356	Homeobox domain
SuperFamily	SSF46689	7.7E-18	56	122	IPR009057	Homeodomain-like
CDD	cd00086	5.85E-15	57	113	No hit	No description
Pfam	PF00046	1.9E-16	57	111	IPR001356	Homeobox domain
Gene3D	G3DSA:1.10.10.60	7.8E-20	59	120	IPR009057	Homeodomain-like
PRINTS	PR00031	2.4E-5	83	92	IPR000047	Helix-turn-helix motif
PROSITE pattern	PS00027	0	87	110	IPR017970	Homeobox, conserved site
PRINTS	PR00031	2.4E-5	92	108	IPR000047	Helix-turn-helix motif

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 215 aa Download sequence Send to blast
MNHRPPFQDH MMLMSQLFPA DAYTQIISQQ GETNKKPRRR RNKKNKGGEN GASEANKKRK 60 LSEVQVNLLE QNFGNERKLE SERKDRLAME LGLDPRQVAV WFQNRRARWK NKKLEEEYSS 120 LKKNHEATLL EKCCLESEVL KLKEQLSEAE KEIQRLLESA ERVPSNSSSS SQSQSMEAVD 180 PPFFGEFGVD GYEDDVFYVP ETHYINGMEW INLYM

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	38	59	RRRNKKNKGGENGASEANKKRK

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	KHN42008.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By abscisic acid (ABA) and by salt stress. {ECO:0000269\|PubMed:16055682}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KT031168	0.0	KT031168.1 Glycine max clone HN_CCL_119 homeodomain/HOMEOBOX transcription factor (Glyma11g06940.1) mRNA, partial cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_003537568.1	1e-160	homeobox-leucine zipper protein ATHB-40
Refseq	XP_028188451.1	1e-160	homeobox-leucine zipper protein ATHB-40-like
Swissprot	O23208	3e-68	ATB40_ARATH; Homeobox-leucine zipper protein ATHB-40
TrEMBL	A0A0B2SB91	1e-158	A0A0B2SB91_GLYSO; Homeobox-leucine zipper protein ATHB-40
TrEMBL	A0A0K2CTA5	1e-158	A0A0K2CTA5_SOYBN; Homeodomain/HOMEOBOX transcription factor (Fragment)
TrEMBL	I1LHN6	1e-158	I1LHN6_SOYBN; Uncharacterized protein
STRING	GLYMA11G06940.1	1e-159	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF4789	32	57

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G36740.1	7e-53	homeobox protein 40

Publications ? help Back to Top
Qi X, et al. Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing. Nat Commun, 2014. 5: p. 4340 [PMID:25004933] González-Grandío E, et al. Abscisic acid signaling is controlled by a BRANCHED1/HD-ZIP I cascade in Arabidopsis axillary buds. Proc. Natl. Acad. Sci. U.S.A., 2017. 114(2): p. E245-E254 [PMID:28028241]