PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN42092.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family bHLH
Protein Properties Length: 381aa    MW: 41491.9 Da    PI: 6.272
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN42092.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH48.81.3e-15144190455
                 HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
         HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                  hn  E+rRR riN+++  L+ l+P++      K +Ka++L +A+eY+k+Lq
  KHN42092.1 144 VHNLSEKRRRGRINEKMKALQNLIPNS-----NKTDKASMLDEAIEYLKQLQ 190
                 6*************************7.....5******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474591.83E-20137200IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.3E-19137200IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088817.625140189IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000838.15E-17143194No hitNo description
PfamPF000103.7E-13144190IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003538.4E-18146195IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0007623Biological Processcircadian rhythm
GO:0009409Biological Processresponse to cold
GO:0010114Biological Processresponse to red light
GO:0010154Biological Processfruit development
GO:0010187Biological Processnegative regulation of seed germination
GO:0048440Biological Processcarpel development
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 381 aa     Download sequence    Send to blast
MGDMYHFDKN LSSQDEISLF LRQILLRSSS PSHSMPAGSC TSNAAQQNVN AHHPSFTASQ  60
LQDGKILAVD STASFVSGSA ACSSFKGHGA SAANVSSSSA GVSENENDDY DCESEEGVEA  120
PAEEVPTKAA SSRSSSKRSR AAEVHNLSEK RRRGRINEKM KALQNLIPNS NKTDKASMLD  180
EAIEYLKQLQ LQVQMLSMRN GLSLHPMCFP EGLQPLQLSQ MGMELSERNR FTSLNMSATL  240
PLHQDNNPLH YASNLPNKHN LPNQPSVPYP PYIDNPETSF GLEPRIQTDM KPLQHKGGSS  300
EPIRGEDILQ HQQSSGIHSD ANTLGGSQVV KEFESGTRLS FPFDTQACEP KDNSNSSQPC  360
IGGRDHSGVI IRNSETNIVG R
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00035PBMTransfer from AT4G36930Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN42092.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKT0311170.0KT031117.1 Glycine max clone HN_CCL_124 bHLH transcription factor (Glyma11g05810.1) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003539355.10.0transcription factor SPATULA isoform X1
RefseqXP_028192096.10.0transcription factor SPATULA-like isoform X1
TrEMBLA0A445HXJ30.0A0A445HXJ3_GLYSO; Transcription factor SPATULA isoform A
TrEMBLI1LHD30.0I1LHD3_SOYBN; BHLH transcription factor (Fragment)
STRINGGLYMA11G05810.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF22763379
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36930.18e-40bHLH family protein
Publications ? help Back to Top
  1. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]