PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN42348.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family bHLH
Protein Properties Length: 273aa    MW: 29733.9 Da    PI: 6.8494
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN42348.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH11.40.00061501871254
                 HHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
         HLH  12 RRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                 R +++ ++++ L++l+ +       K + a++L +A+ YI+ L
  KHN42348.1 150 RKEKLGERIAALQQLVSPF-----SKTDTASVLHEAMGYIRFL 187
                 77788899*********96.....5****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000832.87E-6130192No hitNo description
PROSITE profilePS5088811.128138187IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.14E-10149199IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.0E-7149194IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 273 aa     Download sequence    Send to blast
MEAKKEYEVD HLTTLTGTSF SQLLFGDDDD DYDESALGLA VDQSYTRSPL FSIHKAPQML  60
CFANHQNQGD VLLPETNVTP QKSVITSSDS SSASASSCNH TNTAFNSLPK SNKKRNGMGQ  120
ESVTKVGVGS QRQTKKNKAE NPTSTGHAKR KEKLGERIAA LQQLVSPFSK TDTASVLHEA  180
MGYIRFLHDQ VQVLCSPYLQ SLPSSYHQNQ HGDGVINEEE VNKDLRSRGL CLIPVGCTVH  240
VAGSNGADFW SSAATGNNVN FTISQAVKRN QDQ
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN42348.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0918651e-161BT091865.1 Soybean clone JCVI-FLGm-9A23 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028222533.10.0transcription factor bHLH113-like isoform X4
TrEMBLA0A445F4A40.0A0A445F4A4_GLYSO; Transcription factor bHLH113
STRINGGLYMA20G26630.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF103212129
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19500.12e-49bHLH family protein
Publications ? help Back to Top
  1. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]