PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN42527.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family TALE
Protein Properties Length: 279aa    MW: 31668.7 Da    PI: 5.4512
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN42527.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox27.64.9e-09201256355
                 --SS--HHHHHHHHHHHH...HSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHH CS
    Homeobox   3 kRttftkeqleeLeelFe...knrypsaeereeLAkklgLterqVkvWFqNrRake 55 
                 kR ++ k+  ++L +  +   k +yp++ ++  LAk++gL+++q+ +WF N+R ++
  KHN42527.1 201 KRGKLPKDARQTLLQWWNihyKWPYPTEGDKIALAKSTGLDQKQINNWFINQRKRH 256
                 555555666666655555443679*****************************885 PP
2ELK27.38.3e-10176197122
         ELK   1 ELKhqLlrKYsgyLgsLkqEFs 22 
                 ELK++LlrK+++++g Lk EFs
  KHN42527.1 176 ELKDRLLRKFGSHIGYLKLEFS 197
                 9********************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012554.4E-243781IPR005540KNOX1
PfamPF037901.9E-233980IPR005540KNOX1
SMARTSM012567.0E-2788139IPR005541KNOX2
PfamPF037912.4E-2592138IPR005541KNOX2
SMARTSM011885.1E-5176197IPR005539ELK domain
PfamPF037892.0E-6176197IPR005539ELK domain
PROSITE profilePS512139.411176196IPR005539ELK domain
PROSITE profilePS5007112.94196259IPR001356Homeobox domain
SuperFamilySSF466895.56E-20197270IPR009057Homeodomain-like
SMARTSM003897.3E-14198263IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.601.9E-28201260IPR009057Homeodomain-like
CDDcd000861.35E-12208260No hitNo description
PfamPF059202.6E-17216255IPR008422Homeobox KN domain
PROSITE patternPS000270234257IPR017970Homeobox, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 279 aa     Download sequence    Send to blast
MFGSDELLSA GPAGNETEPY PNVSVAPEIQ RHHDASSLIK AKIASHPHYP RLLQAYIDCQ  60
KVGAPPEIAC LLEEIRREND VCKRDVVVST CVEADPELDE FMETYCDMLV KYKSDLTRPF  120
DEATTFLNKI ETQLTDLCSG SSLLTLSDDG GVSSEEGFSA GDGDPQDGQL RSEDRELKDR  180
LLRKFGSHIG YLKLEFSKKK KRGKLPKDAR QTLLQWWNIH YKWPYPTEGD KIALAKSTGL  240
DQKQINNWFI NQRKRHWKPS ENMPFSMVDG LTGRFLTDE
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1197204KKKKRGKL
Functional Description ? help Back to Top
Source Description
UniProtPlays a role in meristem function. Contributes to the shoot apical meristem (SAM) maintenance and organ separation by controlling boundary establishment in embryo in a CUC1, CUC2 and STM-dependent manner. Involved in maintaining cells in an undifferentiated, meristematic state. Probably binds to the DNA sequence 5'-TGAC-3'. {ECO:0000269|PubMed:16798887}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN42527.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Seems to be repressed by AS2 and AS1 but induced by STM, CUC1 and CUC2. {ECO:0000269|PubMed:11311158, ECO:0000269|PubMed:16798887}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003531995.20.0homeobox protein knotted-1-like 6
RefseqXP_014634796.10.0homeobox protein knotted-1-like 6
RefseqXP_028246972.10.0homeobox protein knotted-1-like 6
SwissprotQ84JS61e-138KNAT6_ARATH; Homeobox protein knotted-1-like 6
TrEMBLA0A0B2SE030.0A0A0B2SE03_GLYSO; Homeobox protein knotted-1-like 6
STRINGGLYMA08G39170.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF62034125
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G23380.11e-129KNOTTED1-like homeobox gene 6
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]
  3. Khan M, et al.
    Repression of Lateral Organ Boundary Genes by PENNYWISE and POUND-FOOLISH Is Essential for Meristem Maintenance and Flowering in Arabidopsis.
    Plant Physiol., 2015. 169(3): p. 2166-86
    [PMID:26417006]