PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN42603.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family bHLH
Protein Properties Length: 180aa    MW: 20447.8 Da    PI: 9.7017
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN42603.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH27.55.6e-092401255
                HHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
         HLH 12 RRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55
                RR++i + f  L  l+P +     kK++Ka++L  A++++k+Lq
  KHN42603.1  2 RREKISQQFVALSALIPDL-----KKMDKASVLGDAIKHVKQLQ 40
                *******************.....9******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003532.5E-7145IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088812.735139IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.0E-12252IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.64E-7244No hitNo description
PfamPF000101.4E-6240IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474599.16E-13254IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0055114Biological Processoxidation-reduction process
GO:0032440Molecular Function2-alkenal reductase [NAD(P)] activity
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 180 aa     Download sequence    Send to blast
MRREKISQQF VALSALIPDL KKMDKASVLG DAIKHVKQLQ EQVKLLEEKN KRKRVVESVV  60
YVKKSKLSAA EDVFNTFSNS GDGNSYDISE TKTNESFPEV EARVLEKHVL IRIHCGKQKG  120
LFINILKDIE NLHLSVINSS ILLFGTSKLD ITIVAEMDEE FSLSVKELAR KLRIGLMQFM
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN42603.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006573685.11e-125transcription factor bHLH18
RefseqXP_028245038.11e-125transcription factor bHLH18-like
TrEMBLA0A445M6361e-124A0A445M636_GLYSO; Transcription factor bHLH25
TrEMBLK7K4T31e-124K7K4T3_SOYBN; Uncharacterized protein
STRINGGLYMA01G40611.11e-124(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF45534164
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G22760.15e-39bHLH family protein
Publications ? help Back to Top
  1. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]