PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN42608.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family C2H2
Protein Properties Length: 246aa    MW: 26873.8 Da    PI: 6.3837
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN42608.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.90.0003380102123
                 EEETTTTEEESSHHHHHHHHHHT CS
     zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                 y C+ C + F++   L  H+++H
  KHN42608.1  80 YYCSFCRREFRSAQALGGHMNVH 102
                 89*******************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576672.59E-677107No hitNo description
PROSITE profilePS5015711.01180107IPR007087Zinc finger, C2H2
PROSITE patternPS00028082102IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 246 aa     Download sequence    Send to blast
MAAEIGLVSM TQIQNLSQTQ HPKNPQPPQP KNPNTTTTSS STWMWNPREQ QQQQVEDDDD  60
SAFAEDTSNM MGTTWPPRFY YCSFCRREFR SAQALGGHMN VHRRDRARLH QAPPSSCSNP  120
MSSSLPTSSF INIPPQELVG NAGLCLLYHL PTSPSSAPPF PSPTSNGASP STLLSISSYP  180
TNNFLMQTSF NFPGAPPTGI NTTTVSSLCY NSSKVEQSAT SSSIDNGHLE ELDLELRLGH  240
KPTPTS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1njq_A1e-1175102229superman protein
2l1o_A1e-1175102229Transcriptional regulator SUPERMAN
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN42608.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHM0384860.0HM038486.1 Glycine max PALMATE-LIKE PENTAFOLIATA2 (PALM2) gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003516632.11e-112transcriptional regulator SUPERMAN
RefseqXP_028245128.11e-112transcriptional regulator SUPERMAN
TrEMBLK7K4T81e-111K7K4T8_SOYBN; Uncharacterized protein
STRINGGLYMA01G40671.11e-112(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF35253155
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17810.17e-28C2H2 family protein
Publications ? help Back to Top
  1. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]