PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN42682.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family MYB_related
Protein Properties Length: 134aa    MW: 15237 Da    PI: 8.0589
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN42682.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding55.71.1e-171665147
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqky 47
                     rg+WT+eEd++l+++++ +G ++Wkt+a +      gRt++++k++w++ 
       KHN42682.1 16 RGAWTAEEDQKLAQCIEIHGAKRWKTVAIKSAkrlPGRTDNEIKNYWNTC 65
                     89*************************988777777***********986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129420.1461170IPR017930Myb domain
SuperFamilySSF466895.46E-151275IPR009057Homeodomain-like
SMARTSM007173.2E-121568IPR001005SANT/Myb domain
PfamPF002494.7E-151665IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.3E-201779IPR009057Homeodomain-like
CDDcd001673.15E-131864No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 134 aa     Download sequence    Send to blast
MAPTKNDETA KKTNNRGAWT AEEDQKLAQC IEIHGAKRWK TVAIKSAKRL PGRTDNEIKN  60
YWNTCLCKKL NRTKVKPETS TAQATHTTRS TEERAAVENK ERIDDGSGDS EVNFDVNEFF  120
NFSIEGPFAL DWMI
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN42682.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028215100.16e-86transcription factor MYB32-like
TrEMBLA0A445M5V21e-84A0A445M5V2_GLYSO; Anthocyanin regulatory C1 protein
STRINGGLYMA01G41610.22e-84(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF21483288
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G26660.17e-14myb domain protein 86
Publications ? help Back to Top
  1. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]