PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN42718.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family M-type_MADS
Protein Properties Length: 134aa    MW: 15560.2 Da    PI: 10.6201
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN42718.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF46.35.6e-15434434
                -SHHHHHHHHHHHHHHHHHHHHHHHHHHT-E CS
      SRF-TF  4 enksnrqvtfskRrngilKKAeELSvLCdae 34
                 nksn qv fskRr g+lKKA+EL++LC+ae
  KHN42718.1  4 TNKSNLQVPFSKRRSGVLKKASELCTLCGAE 34
                69***************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006614.059134IPR002100Transcription factor, MADS-box
SMARTSM004329.8E-4248IPR002100Transcription factor, MADS-box
CDDcd001202.01E-13234No hitNo description
PfamPF003196.2E-13234IPR002100Transcription factor, MADS-box
SuperFamilySSF554557.72E-11334IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 134 aa     Download sequence    Send to blast
MKMTNKSNLQ VPFSKRRSGV LKKASELCTL CGAERLPPHD TQFMGVNLHE LNAQLTKFTT  60
QLETEKKRAS ELKRLHQVVQ IQWWWAAPVN EMSISQLNEC KGALQQMKMN TTRKSEMILI  120
HTAINYPTLF FRKQ
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN42718.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2352001e-170AC235200.1 Glycine max strain Williams 82 clone GM_WBb0014O04, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028189847.11e-66agamous-like MADS-box protein AGL62
TrEMBLA0A445M6872e-95A0A445M687_GLYSO; Agamous-like MADS-box protein AGL62
STRINGGLYMA11G03261.12e-68(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60440.14e-26AGAMOUS-like 62
Publications ? help Back to Top
  1. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]