PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN42768.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family NAC
Protein Properties Length: 353aa    MW: 41126.9 Da    PI: 6.5162
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN42768.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM179.68.1e-5671361129
         NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk..kvka.eekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskk 96 
                 +ppGfrFhPtdeelv++yL+kkv+++ ++l +vik+vd+yk+ePwdL++  ++ a e++ewyfFs++dkky+tg+r+nrat++g+Wkatg+dk+++s k
  KHN42768.1   7 VPPGFRFHPTDEELVDYYLRKKVTSRGIDL-DVIKDVDLYKIEPWDLQElcRIGAqEQNEWYFFSHKDKKYPTGTRTNRATAAGFWKATGRDKAIYS-K 103
                 69****************************.9***************954555442556**************************************.8 PP

         NAM  97 gelvglkktLvfykgrapkgektdWvmheyrle 129
                 + l+g++ktLvfykgrap+g+k+dW+mheyrle
  KHN42768.1 104 HDLIGMRKTLVFYKGRAPNGQKSDWIMHEYRLE 136
                 899****************************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.18E-604166IPR003441NAC domain
PROSITE profilePS5100559.3157166IPR003441NAC domain
PfamPF023656.9E-298135IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 353 aa     Download sequence    Send to blast
MNNFSHVPPG FRFHPTDEEL VDYYLRKKVT SRGIDLDVIK DVDLYKIEPW DLQELCRIGA  60
QEQNEWYFFS HKDKKYPTGT RTNRATAAGF WKATGRDKAI YSKHDLIGMR KTLVFYKGRA  120
PNGQKSDWIM HEYRLETDEN GAPQASLKTY IYNQEEGWVV CRVFKKRLTT MRKLSEHDSP  180
CWYDDQVSFM QDLDSPKQSS QPNLPYQQFQ YSCKKELDLS YHLPVQLPLE NQKLLQSASN  240
SMTPYGIEEN PNAMQPASSM MQQVQQQNFQ AVVFGNNAND QQVTDWRSLD KYVASQLSQE  300
DASKDHNRYS NTGNIFQVKN NSNIEQLRDL DKDEMMPENA STSNSSCPIN MWK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A6e-50616714169Stress-induced transcription factor NAC1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that binds to the secondary wall NAC binding element (SNBE), 5'-(T/A)NN(C/T)(T/C/G)TNNNNNNNA(A/C)GN(A/C/T)(A/T)-3', in the promoter of target genes (By similarity). Involved in xylem formation by promoting the expression of secondary wall-associated transcription factors and of genes involved in secondary wall biosynthesis and programmed cell death, genes driven by the secondary wall NAC binding element (SNBE). Triggers thickening of secondary walls (PubMed:16103214, PubMed:25148240). {ECO:0000250|UniProtKB:Q9LVA1, ECO:0000269|PubMed:16103214, ECO:0000269|PubMed:25148240}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN42768.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150401e-140AP015040.1 Vigna angularis var. angularis DNA, chromosome 7, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003526377.20.0NAC domain-containing protein 7
RefseqXP_028238428.10.0NAC domain-containing protein 7-like
SwissprotQ9FWX21e-131NAC7_ARATH; NAC domain-containing protein 7
TrEMBLA0A0B2SDA30.0A0A0B2SDA3_GLYSO; NAC domain-containing protein 7
STRINGGLYMA06G47680.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF126933106
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G12260.11e-117NAC 007
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Heyndrickx KS,Vandepoele K
    Systematic identification of functional plant modules through the integration of complementary data sources.
    Plant Physiol., 2012. 159(3): p. 884-901
    [PMID:22589469]
  3. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]