PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN42936.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family FAR1
Protein Properties Length: 227aa    MW: 25947.7 Da    PI: 5.6667
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN42936.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR122.44.1e-0771107239
        FAR1   2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskeg 39 
                 fY+eYA++ GF vrk   +++   g+i k +f C+ke 
  KHN42936.1  71 FYREYARSHGFVVRKYDVSQN-VAGNINKCQFICNKEV 107
                 9***************99998.7888**********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031011.5E-471108IPR004330FAR1 DNA binding domain
Sequence ? help Back to Top
Protein Sequence    Length: 227 aa     Download sequence    Send to blast
SHVNLDDNKE MSHNVDVNSD ENDNGDKGDV GIENVEDRED ATNEEDRRIV GLVSDEINVL  60
DFGSEEHAFI FYREYARSHG FVVRKYDVSQ NVAGNINKCQ FICNKEVSKF VETHNHHLTP  120
VNHVHHMPEY QVLFDLDKAQ VDSLHSFGSR TCQIMGYLLA KKGGYGSIRS LKNDLHNHKK  180
KIGLSDLEGK SNNDPTFYSI IEITIDGKLK HLFWVDGCSK SDFQCFW
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN42936.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
STRINGGLYMA07G35355.11e-167(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF3290752
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G15090.15e-12FAR1 family protein
Publications ? help Back to Top
  1. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]