PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN42938.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family C2H2
Protein Properties Length: 522aa    MW: 58830.8 Da    PI: 9.1585
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN42938.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.30.001471493123
                 EEETTTTEEESSHHHHHHHHHHT CS
     zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                 ++Cp+C k F++   L  H r+H
  KHN42938.1 471 HECPICYKIFKSGQALGGHKRSH 493
                 79******************999 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576672.24E-9529No hitNo description
Gene3DG3DSA:3.30.160.601.7E-4529IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.078729IPR015880Zinc finger, C2H2-like
PfamPF139121.1E-5729IPR007087Zinc finger, C2H2
PROSITE profilePS5015710.388734IPR007087Zinc finger, C2H2
PROSITE patternPS000280929IPR007087Zinc finger, C2H2
SuperFamilySSF576672.24E-9108135No hitNo description
SMARTSM003550.14113135IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.723113140IPR007087Zinc finger, C2H2
PfamPF139124.3E-7115137IPR007087Zinc finger, C2H2
PROSITE patternPS000280115135IPR007087Zinc finger, C2H2
PROSITE profilePS501579.078471493IPR007087Zinc finger, C2H2
SMARTSM003550.24471493IPR015880Zinc finger, C2H2-like
PfamPF139126.9E-11471493IPR007087Zinc finger, C2H2
PROSITE patternPS000280473493IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 522 aa     Download sequence    Send to blast
MEERKKYVCK YCSKRFPCGK SLGGHIRTHI MTEERSNDVV VVDGDDNNDN MFIKLDGTVM  60
RNNKKRDLLW CEDNNNPIYG LRENPKKTVR FVHSGGGANA NNNEQQQNKE DKRFCKECGK  120
GFPSLKALCG HMACHSEKEK RTTTTTIKFE EEKLVMDSRS DTETCAPTTH PRRSKRMRVK  180
KTINLSNHNP FFSFSSSSSS GVVPLANGSS PVSEVEQEEQ EEVARCLMLL SRDSSFNFKG  240
GRFASVTESS DNNSVILEAK LSSPDTRIGV SNGNNNNNFV SNNHAYDLVA KKLLKVKDIK  300
FKSAEFGASD NYSGSRFFRY GPKTKMVDSD FSNDEFRWSK VEGKSSKYTA SVVKKLGVED  360
LDYDTTHGTT RKFDSIKRNN YDLVGVSSKK IASGFGNEVY KNGTRGWKYE CFEVERDNDS  420
YDSIDDESNE NSSETESFPA PRSHHKSKAL NGKKCTKPKK KLKPSKKSKD HECPICYKIF  480
KSGQALGGHK RSHFIGGSEE NTMVIKQVPY FIDLNLPAPV DE
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN42938.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006583954.10.0uncharacterized protein LOC102665457
RefseqXP_028241449.10.0uncharacterized protein LOC114419846
TrEMBLA0A445K0C30.0A0A445K0C3_GLYSO; Zinc finger protein ZAT9
TrEMBLI1KME30.0I1KME3_SOYBN; Uncharacterized protein
STRINGGLYMA07G35330.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF11013080
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G26610.13e-38C2H2-like zinc finger protein
Publications ? help Back to Top
  1. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]