PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

KHN43075.1

Organism

Glycine soja

Taxonomic ID

3848

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja

Family

MYB_related

Protein Properties

Length: 149aa MW: 16739.2 Da PI: 5.0571

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
KHN43075.1	genome	TCUHK	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	35.2	2.9e-11	11	55	3	45
SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwq 45 W+ e d+ + +a + ++ + +W++Ia+ ++ g+t +++k ++ KHN43075.1 11 EWSREQDKAFENALATHPEDdsdRWEKIAADVP-GKTIEEIKQHYE 55 6******************************.********96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	5.3E-6	8	62	IPR009057	Homeodomain-like
SMART	SM00717	1.1E-9	8	60	IPR001005	SANT/Myb domain
PROSITE profile	PS50090	6.992	10	58	IPR017877	Myb-like domain
SuperFamily	SSF46689	1.17E-11	11	65	IPR009057	Homeodomain-like
CDD	cd00167	1.39E-9	11	58	No hit	No description
Pfam	PF00249	2.0E-9	11	55	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 149 aa Download sequence Send to blast
MTQIVGRRYS EWSREQDKAF ENALATHPED DSDRWEKIAA DVPGKTIEEI KQHYELLVED 60 INQIESGCVP LPSYNSSSEG STSHASDEGA GKKGSGPGHY SGESNHGTKA SRSDQERRKG 120 IAWTEDEHRQ VYYCLYNLNK PIYASIGYI

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2cjj_A	3e-20	12	77	11	76	RADIALIS
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that coordinates abscisic acid (ABA) biosynthesis and signaling-related genes via binding to the specific promoter motif 5'-(A/T)AACCAT-3'. Represses ABA-mediated salt (e.g. NaCl and KCl) stress tolerance. Regulates leaf shape and promotes vegetative growth. {ECO:0000269\|PubMed:26243618}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	KHN43075.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by salicylic acid (SA) and gibberellic acid (GA) (PubMed:16463103). Triggered by dehydration and salt stress (PubMed:26243618). {ECO:0000269\|PubMed:16463103, ECO:0000269\|PubMed:26243618}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC235875	0.0	AC235875.2 Glycine max clone GM_WBb0144J22, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_003555779.1	1e-82	transcription factor SRM1
Refseq	XP_006605472.1	1e-82	transcription factor SRM1
Refseq	XP_006605473.1	1e-82	transcription factor SRM1
Refseq	XP_028222624.1	1e-82	transcription factor SRM1-like
Refseq	XP_028222625.1	1e-82	transcription factor SRM1-like
Swissprot	Q9FNN6	1e-47	SRM1_ARATH; Transcription factor SRM1
TrEMBL	A0A0B2SD99	1e-106	A0A0B2SD99_GLYSO; DnaJ like subfamily C member 2
STRING	GLYMA20G01450.1	4e-82	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF16956	5	8

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G08520.1	5e-50	MYB family protein

Publications ? help Back to Top
Qi X, et al. Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing. Nat Commun, 2014. 5: p. 4340 [PMID:25004933] Wang T, et al. Salt-Related MYB1 Coordinates Abscisic Acid Biosynthesis and Signaling during Salt Stress in Arabidopsis. Plant Physiol., 2015. 169(2): p. 1027-41 [PMID:26243618] Chen YS, et al. Two MYB-related transcription factors play opposite roles in sugar signaling in Arabidopsis. Plant Mol. Biol., 2017. 93(3): p. 299-311 [PMID:27866313]