PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

KHN43088.1

Organism

Glycine soja

Taxonomic ID

3848

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja

Family

GRAS

Protein Properties

Length: 107aa MW: 12519.5 Da PI: 10.0429

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
KHN43088.1	genome	TCUHK	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	116	4.7e-36	1	106	267	373
GRAS 267 lfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdr 365 +++s++ +lpr+s++r++vE+++l+r+ivn++aceg+er+erhe l+kW++rl+ aGF+++pl+++++ +k+llr ++ + y++ e++g+++ gWkdr KHN43088.1 1 MLESIDLSLPRKSKQRVNVEQHCLARNIVNIIACEGKERVERHELLGKWKSRLTIAGFRQYPLGSYVNFVIKSLLRWYP-EHYNLVEKDGAMLVGWKDR 98 79***************************************************************************.55************* PP GRAS 366 pLvsvSaW 373 +L+s+SaW KHN43088.1 99 NLISASAW 106 ****** PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03514	1.6E-33	1	106	IPR005202	Transcription factor GRAS
PROSITE profile	PS50985	17.788	1	88	IPR005202	Transcription factor GRAS

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated

Sequence ? help Back to Top
Protein Sequence Length: 107 aa Download sequence Send to blast
MLESIDLSLP RKSKQRVNVE QHCLARNIVN IIACEGKERV ERHELLGKWK SRLTIAGFRQ 60 YPLGSYVNFV IKSLLRWYPE HYNLVEKDGA MLVGWKDRNL ISASAWH

Functional Description ? help Back to Top
Source	Description
UniProt	May play a regulatory role in the early step of oligosaccharide elicitor response, downstream of the membrane-associated high-affinity chitin-binding protein. {ECO:0000269\|PubMed:12591613}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	KHN43088.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By oligosaccharide elicitor (N-Acetylchitooligosaccharide) extracted from the rice blast fungus (M.grisea) cell wall. Strongest induction by chitin oligomer with greater degree of polymerization (heptamer). By inoculation of M.grisea in rice cell suspension culture. {ECO:0000269\|PubMed:12591613}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_003526176.1	2e-62	scarecrow-like protein 21
Refseq	XP_006582237.1	2e-62	scarecrow-like protein 21
Refseq	XP_006582238.1	2e-62	scarecrow-like protein 21
Swissprot	Q69VG1	4e-52	CIGR1_ORYSJ; Chitin-inducible gibberellin-responsive protein 1
TrEMBL	A0A0B2SE62	2e-73	A0A0B2SE62_GLYSO; Chitin-inducible gibberellin-responsive protein 1
STRING	GLYMA06G41500.1	7e-62	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF36930	2	2

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G48150.2	6e-47	GRAS family protein

Publications ? help Back to Top
Day RB, et al. Two rice GRAS family genes responsive to N -acetylchitooligosaccharide elicitor are induced by phytoactive gibberellins: evidence for cross-talk between elicitor and gibberellin signaling in rice cells. Plant Mol. Biol., 2004. 54(2): p. 261-72 [PMID:15159627] Qi X, et al. Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing. Nat Commun, 2014. 5: p. 4340 [PMID:25004933]