PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN43091.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family GRAS
Protein Properties Length: 355aa    MW: 39838.8 Da    PI: 6.845
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN43091.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS4094.4e-125635422373
        GRAS  22 alLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaNqaIleavegeervHiiDfdis 120
                 +l+++ +  +s +g+p+qRl ay++e+L ar   s++++y+al+++e +    ++ l++++l++e++P+lkf++++aN aI ea  +e+ +HiiDf+i+
  KHN43091.1   6 QLIEKARSAVSITGEPIQRLGAYLVEGLVARKEASGNNIYHALRCREPE---GKDLLSYMQLLYEICPYLKFGYMAANGAIAEACRNEDLIHIIDFQIG 101
                 788899999***************************************9...9********************************************** PP

        GRAS 121 qGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldes 217
                 qG+QW++LlqaLa+Rp+g+p++RiTg++++ s+  + + le++g+rLa + +++++p+ef+  v     d++ ++L+v+pgEalaVn+ lqlh++ des
  KHN43091.1 102 QGTQWMTLLQALAARPGGAPHVRITGIDDQLSKyvRGDGLEAVGKRLAAISQTFNIPVEFHG-VPVLAPDVTKDMLDVRPGEALAVNFPLQLHHTADES 199
                 *****************************877789***************************.67788999**************************** PP

        GRAS 218 vsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWr 316
                 v+++++rd +L+lvkslsPkv ++veqe+++n+++F++rf+e+l+yy a+f+s++++lpr+s+er++vE+++l+r+ivn++aceg+er+erhe l+kW+
  KHN43091.1 200 VDMSNPRDGLLRLVKSLSPKVTTLVEQESNTNTTPFFNRFIETLDYYLAMFESIDVSLPRKSKERVNVEQHCLARDIVNIIACEGKERVERHELLGKWK 298
                 *************************************************************************************************** PP

        GRAS 317 erleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaW 373
                 +rl++aGF ++pls+++++ +++llr ++ + y++ e++g+++lgWkdr+L+s+SaW
  KHN43091.1 299 SRLTMAGFCQYPLSSYVNSVIRSLLRCYS-EHYNLVEKDGAMLLGWKDRNLISASAW 354
                 *************************9999.66************************* PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098563.2881336IPR005202Transcription factor GRAS
PfamPF035141.5E-1226354IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 355 aa     Download sequence    Send to blast
MKGFDQLIEK ARSAVSITGE PIQRLGAYLV EGLVARKEAS GNNIYHALRC REPEGKDLLS  60
YMQLLYEICP YLKFGYMAAN GAIAEACRNE DLIHIIDFQI GQGTQWMTLL QALAARPGGA  120
PHVRITGIDD QLSKYVRGDG LEAVGKRLAA ISQTFNIPVE FHGVPVLAPD VTKDMLDVRP  180
GEALAVNFPL QLHHTADESV DMSNPRDGLL RLVKSLSPKV TTLVEQESNT NTTPFFNRFI  240
ETLDYYLAMF ESIDVSLPRK SKERVNVEQH CLARDIVNII ACEGKERVER HELLGKWKSR  300
LTMAGFCQYP LSSYVNSVIR SLLRCYSEHY NLVEKDGAML LGWKDRNLIS ASAWH
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A8e-62835526375GRAS family transcription factor containing protein, expressed
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtMay play a regulatory role in the early step of oligosaccharide elicitor response, downstream of the membrane-associated high-affinity chitin-binding protein. {ECO:0000269|PubMed:12591613}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN43091.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By oligosaccharide elicitor (N-Acetylchitooligosaccharide) extracted from the rice blast fungus (M.grisea) cell wall. Strongest induction by chitin oligomer with greater degree of polymerization (heptamer). By inoculation of M.grisea in rice cell suspension culture. {ECO:0000269|PubMed:12591613}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150390.0AP015039.1 Vigna angularis var. angularis DNA, chromosome 6, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028237900.10.0scarecrow-like protein 21
RefseqXP_028237901.10.0scarecrow-like protein 21
RefseqXP_028237902.10.0scarecrow-like protein 21
SwissprotQ69VG10.0CIGR1_ORYSJ; Chitin-inducible gibberellin-responsive protein 1
TrEMBLA0A0B2S8S10.0A0A0B2S8S1_GLYSO; Chitin-inducible gibberellin-responsive protein 1
TrEMBLA0A445KEP30.0A0A445KEP3_GLYSO; Chitin-inducible gibberellin-responsive protein 1 isoform A
STRINGGLYMA06G41500.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF42993360
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48150.21e-172GRAS family protein
Publications ? help Back to Top
  1. Day RB, et al.
    Two rice GRAS family genes responsive to N -acetylchitooligosaccharide elicitor are induced by phytoactive gibberellins: evidence for cross-talk between elicitor and gibberellin signaling in rice cells.
    Plant Mol. Biol., 2004. 54(2): p. 261-72
    [PMID:15159627]
  2. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]