PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN43212.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family GeBP
Protein Properties Length: 338aa    MW: 37487.4 Da    PI: 4.5244
Description GeBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN43212.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF57381.71.1e-25581371897
      DUF573  18 GlidfkaktgkspsddidafyefvkksisfkvsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqkifelskkiWg 97 
                 G++d+++++ +s  +++  fy+++k++++++++k+qlveKirrLKkK+++  +k+ sgke+sf+++hdq +fe+s+kiW 
  KHN43212.1  58 GFLDYTSQRVSSHDSNTALFYDQIKSKLQLDFNKNQLVEKIRRLKKKYRNVLNKIGSGKEFSFKSAHDQATFEISRKIWS 137
                 9****9999988777****************************************************************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF045044.5E-2458137IPR007592Protein of unknown function DUF573
Sequence ? help Back to Top
Protein Sequence    Length: 338 aa     Download sequence    Send to blast
MASQQHDAVF REEDMDDDDD ESQEDGDYEE EDDDVLADDE ENEPSPSTAL AVTVAVPGFL  60
DYTSQRVSSH DSNTALFYDQ IKSKLQLDFN KNQLVEKIRR LKKKYRNVLN KIGSGKEFSF  120
KSAHDQATFE ISRKIWSNVT PIGDNSLDDD EINPNRSPNP NLNFSPIILK NEMIFRNPAE  180
KKTPKRSRPR SAVKIEPNDG SASNRDHDCI SNATPTATAT AAATNTTPTA ATTNDNCNSG  240
YGNNIPSMIE ETVRSCLSPV LKELMAGAMG GGAFGARGFS LNLNPMPLMN WSFGGGEMVD  300
EKWRKQQILE LEVYSKRLEL VQDQIKAAME ELRSHGGG
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN43212.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003553753.11e-172probable transcription factor At3g04930
RefseqXP_028218581.11e-172probable transcription factor At3g04930
SwissprotF4K5T42e-66STKLU_ARATH; Probable transcription factor At5g28040
TrEMBLA0A445FL001e-171A0A445FL00_GLYSO; Putative transcription factor
TrEMBLI1NC701e-171I1NC70_SOYBN; Uncharacterized protein
STRINGGLYMA19G43180.11e-171(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF32553365
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G28040.11e-60DNA-binding storekeeper protein-related transcriptional regulator
Publications ? help Back to Top
  1. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]
  2. García-Cano E,Hak H,Magori S,Lazarowitz SG,Citovsky V
    The Agrobacterium F-Box Protein Effector VirF Destabilizes the Arabidopsis GLABROUS1 Enhancer/Binding Protein-Like Transcription Factor VFP4, a Transcriptional Activator of Defense Response Genes.
    Mol. Plant Microbe Interact., 2018. 31(5): p. 576-586
    [PMID:29264953]