PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN43455.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family GRAS
Protein Properties Length: 576aa    MW: 65766.3 Da    PI: 5.8031
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN43455.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS265.91.3e-812065742374
        GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetsekn..sseelaalklfsevsPilkfshlta 98 
                  + Ll++Ae v  +++e+a+ lL + +  ++ +++p+qR++++f++AL++r+++++ ++  + + ++++++     ++  alk  +   P+ ++ ++t 
  KHN43455.1 206 AQFLLAAAERVGCQQFERANGLLLHCEWSSNASANPVQRVIFHFARALRERIYKETGRMTVKGSGKNEERELlqKMDTNIALKC-HLKVPFNQVMQFTG 303
                 678***************************************************665555444444444333333333333344.4457********** PP

        GRAS  99 NqaIleavegeervHiiDfdisqGlQWpaLlqaLasRp.egppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledleleeLrv 196
                  qaI+e v+ e+++H iD++i  G+Q+ aL+qaLa+R+ +    l+iT++g ++   k+++eetg+rLa+fAe+l++pf+++++ ++++++++ +++++
  KHN43455.1 304 IQAIVEHVACETKIHLIDLEIRSGVQYTALMQALAERRdRIVQLLKITAIGLSS--LKTMIEETGKRLASFAESLNLPFSYKTVFVTDIAEIREDHFEI 400
                 ***********************************999455679********55..99***************************************** PP

        GRAS 197 kpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreiv 295
                  ++Ea+aV + + l ++++++ ++e+    +++++++++P +++v e ea+hns+sF+++f+eal +ysa fd+le+ + +e e r+++E++ l++ i+
  KHN43455.1 401 GEDEAVAVYSPYFLRSMVSRPDCMEN----LMRVIRNIKPVIMIVLEVEANHNSPSFVNGFIEALFFYSAYFDCLETCIKHEIECRMTIEAV-LSEGIR 494
                 *****************988888888....*************************************************************9.****** PP

        GRAS 296 nvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgWkdrpLvsvSaWr 374
                 ++va+eg+er+ r+ +   Wr+ + +  + +  +se+    a+l+ + ++ ++  ++e++ ++l+ gWk+ p+ s+SaWr
  KHN43455.1 495 DIVAMEGRERTVRNVKIDVWRRFFARYRMVETGFSESSLYHAHLVAKGFSfGKFCTIEKNGKCLIVGWKGTPMHSISAWR 574
                 **************************************************888789***********************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098535.049179553IPR005202Transcription factor GRAS
PfamPF035144.7E-79206574IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 576 aa     Download sequence    Send to blast
MEIDQFSSTD LNFKGTQMGY GSTQEDVFQG KESLSGMELL GEIDPLPAEN GKGVKLFKYQ  60
DQKQLQEPKA DNLMLEEVNF DPDVQMQPTQ LFQETEGLMK HGVASTEPVE YNKQVAPTPS  120
LASLELLRNY GSRFKRLSEQ NISTLSNIET SFDRQKMSTE EIIRVAGARY IQYSAHWNDS  180
FYIPMHPYGL DLGGLSEEEN RDIELAQFLL AAAERVGCQQ FERANGLLLH CEWSSNASAN  240
PVQRVIFHFA RALRERIYKE TGRMTVKGSG KNEERELLQK MDTNIALKCH LKVPFNQVMQ  300
FTGIQAIVEH VACETKIHLI DLEIRSGVQY TALMQALAER RDRIVQLLKI TAIGLSSLKT  360
MIEETGKRLA SFAESLNLPF SYKTVFVTDI AEIREDHFEI GEDEAVAVYS PYFLRSMVSR  420
PDCMENLMRV IRNIKPVIMI VLEVEANHNS PSFVNGFIEA LFFYSAYFDC LETCIKHEIE  480
CRMTIEAVLS EGIRDIVAME GRERTVRNVK IDVWRRFFAR YRMVETGFSE SSLYHAHLVA  540
KGFSFGKFCT IEKNGKCLIV GWKGTPMHSI SAWRFL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_A3e-3121357326377Protein SCARECROW
5b3h_D3e-3121357326377Protein SCARECROW
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN43455.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028217963.10.0DELLA protein RGL1-like
TrEMBLA0A445FJY70.0A0A445FJY7_GLYSO; DELLA protein GAI1
STRINGGLYMA19G40440.20.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF47933162
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66350.14e-50RGA-like 1
Publications ? help Back to Top
  1. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]