PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN43478.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family C2H2
Protein Properties Length: 194aa    MW: 21923.8 Da    PI: 10.7318
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN43478.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H215.93.8e-054264123
                EEETTTTEEESSHHHHHHHHHHT CS
     zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                ++C++C+++F ++  L  H++ H
  KHN43478.1 42 FRCHYCKRVFGNSQALGGHQNAH 64
                89*****************9988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576673.41E-63969No hitNo description
PfamPF139122.7E-54266IPR007087Zinc finger, C2H2
PROSITE profilePS5015711.2814269IPR007087Zinc finger, C2H2
PROSITE patternPS0002804464IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 194 aa     Download sequence    Send to blast
MSNHHHVVQT SPPKLFGFPL TEQEELNSDA ERKYEVGEDR KFRCHYCKRV FGNSQALGGH  60
QNAHKKERQR ARRFQIHTHR RSIAAPSSAS VLNSHAIIRS VPSVTVTTLP SSIYLRGGPP  120
TTSSLLPIFH PRQPNNTKHF PSRPILIPSS TYHRTNCTPS FPFQLYASPS VLQSAPNVRD  180
FSAESREVDV HLKL
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN43478.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0932089e-61BT093208.1 Soybean clone JCVI-FLGm-17A17 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003554539.11e-141protein LATE FLOWERING
RefseqXP_028217624.11e-141protein LATE FLOWERING-like
TrEMBLA0A445FJV31e-140A0A445FJV3_GLYSO; Zinc finger protein GIS2
TrEMBLI1NBA61e-140I1NBA6_SOYBN; Uncharacterized protein
STRINGGLYMA19G40220.11e-141(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF39032449
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06650.13e-16C2H2 family protein
Publications ? help Back to Top
  1. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]