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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| TF ID | KHN43604.1 | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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| Family | NF-YA | ||||||||
| Protein Properties | Length: 335aa MW: 36505.1 Da PI: 9.1424 | ||||||||
| Description | NF-YA family protein | ||||||||
| Gene Model |
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| Signature Domain? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | CBFB_NFYA | 96.7 | 2.6e-30 | 166 | 222 | 1 | 58 |
CBFB_NFYA 1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58
d p+YVNaKQy++I++RRq+Rak+ ++kl +k kpy+heSRh hA+rRpRgsgGrF
KHN43604.1 166 DGPIYVNAKQYHGIIRRRQSRAKAVLDHKL-TKRCKPYMHESRHLHAMRRPRGSGGRF 222
57****************************.999***********************9 PP
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| Protein Features ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Database | Entry ID | E-value | Start | End | InterPro ID | Description |
| SMART | SM00521 | 5.8E-35 | 164 | 225 | IPR001289 | Nuclear transcription factor Y subunit A |
| PROSITE profile | PS51152 | 34.609 | 165 | 225 | IPR001289 | Nuclear transcription factor Y subunit A |
| PRINTS | PR00616 | 3.2E-22 | 168 | 190 | IPR001289 | Nuclear transcription factor Y subunit A |
| Pfam | PF02045 | 5.1E-27 | 168 | 222 | IPR001289 | Nuclear transcription factor Y subunit A |
| PRINTS | PR00616 | 3.2E-22 | 199 | 222 | IPR001289 | Nuclear transcription factor Y subunit A |
| Gene Ontology ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| GO Term | GO Category | GO Description | ||||
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
| Sequence ? help Back to Top |
|---|
| Protein Sequence Length: 335 aa Download sequence Send to blast |
MAMQTVYLKK HEGNAHNFVG TLSSAASAPW WSAFGSQSVH QGESCGQMKP FALELPNCID 60 QLAATKLSAR GAEQVLGEGH TTQFTIFPDV SSSDGCKMSD DAQKLQTTIS LQSSLTDPHS 120 RFEIGFSQPM LCAKYPYTDQ FYGLFSAYAP QISGRIMLPL NMSSDDGPIY VNAKQYHGII 180 RRRQSRAKAV LDHKLTKRCK PYMHESRHLH AMRRPRGSGG RFLNTRSSIN GNGKLGNEVH 240 KTVGEQLQSS DSQSSEFLQS EVGTLNSSKE TNGSSPNISG SEVTSMYSRG GLDSFSLNHL 300 GSAVHSFANM IDGGRGMIIP PKWVAAAGNC YNLKV |
| 3D Structure ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
| 4g91_A | 1e-16 | 166 | 223 | 2 | 60 | HAPB protein |
| 4g92_A | 1e-16 | 166 | 223 | 2 | 60 | HAPB protein |
| Search in ModeBase | ||||||
| Cis-element ? help Back to Top | |
|---|---|
| Source | Link |
| PlantRegMap | KHN43604.1 |
| Regulation -- PlantRegMap ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Source | Upstream Regulator | Target Gene | ||||
| PlantRegMap | Retrieve | - | ||||
| Annotation -- Nucleotide ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Source | Hit ID | E-value | Description | |||
| GenBank | BT092539 | 0.0 | BT092539.1 Soybean clone JCVI-FLGm-16A23 unknown mRNA. | |||
| Annotation -- Protein ? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-value | Description | ||||
| Refseq | XP_006604658.1 | 0.0 | nuclear transcription factor Y subunit A-10 isoform X2 | ||||
| Refseq | XP_006604659.1 | 0.0 | nuclear transcription factor Y subunit A-10 isoform X2 | ||||
| Refseq | XP_006604660.1 | 0.0 | nuclear transcription factor Y subunit A-10 isoform X2 | ||||
| Refseq | XP_006604661.1 | 0.0 | nuclear transcription factor Y subunit A-10 isoform X2 | ||||
| Refseq | XP_006604662.1 | 0.0 | nuclear transcription factor Y subunit A-10 isoform X2 | ||||
| Refseq | XP_014626885.1 | 0.0 | nuclear transcription factor Y subunit A-10 isoform X2 | ||||
| Refseq | XP_028215962.1 | 0.0 | nuclear transcription factor Y subunit A-10-like isoform X3 | ||||
| Refseq | XP_028215963.1 | 0.0 | nuclear transcription factor Y subunit A-10-like isoform X3 | ||||
| Refseq | XP_028215964.1 | 0.0 | nuclear transcription factor Y subunit A-10-like isoform X3 | ||||
| Refseq | XP_028215965.1 | 0.0 | nuclear transcription factor Y subunit A-10-like isoform X3 | ||||
| Refseq | XP_028215966.1 | 0.0 | nuclear transcription factor Y subunit A-10-like isoform X3 | ||||
| Refseq | XP_028215967.1 | 0.0 | nuclear transcription factor Y subunit A-10-like isoform X3 | ||||
| Refseq | XP_028215968.1 | 0.0 | nuclear transcription factor Y subunit A-10-like isoform X3 | ||||
| Refseq | XP_028215969.1 | 0.0 | nuclear transcription factor Y subunit A-10-like isoform X3 | ||||
| TrEMBL | A0A445FJ09 | 0.0 | A0A445FJ09_GLYSO; Nuclear transcription factor Y subunit A-10 isoform B | ||||
| TrEMBL | K7MZC1 | 0.0 | K7MZC1_SOYBN; Uncharacterized protein | ||||
| STRING | GLYMA19G38800.2 | 0.0 | (Glycine max) | ||||
| Orthologous Group ? help Back to Top | |||
|---|---|---|---|
| Lineage | Orthologous Group ID | Taxa Number | Gene Number |
| Fabids | OGEF3794 | 34 | 64 |
| Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Hit ID | E-value | Description | ||||
| AT5G06510.2 | 1e-52 | nuclear factor Y, subunit A10 | ||||
| Publications ? help Back to Top | |||
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for Bioinformatics, Peking University Last Modified: 2022-12-08 Questions or Comments, please contact  |
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