PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN43649.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family NF-X1
Protein Properties Length: 1139aa    MW: 122644 Da    PI: 8.1759
Description NF-X1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN43649.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-NF-X117.31e-05335353119
    zf-NF-X1   1 CGkHkCqklCHeGpCppCp 19 
                 CG+H+C+ +CH GpC pC+
  KHN43649.1 335 CGRHRCEHICHVGPCNPCK 353
                 ******************8 PP
2zf-NF-X116.22.3e-05399416118
    zf-NF-X1   1 CGkHkCqklCHeGpCppC 18 
                 CG+H C+++CH+G C++C
  KHN43649.1 399 CGNHVCSEICHPGSCGEC 416
                 ****************** PP
3zf-NF-X122.32.8e-07457474118
    zf-NF-X1   1 CGkHkCqklCHeGpCppC 18 
                 CG+H+C++ CH G+CppC
  KHN43649.1 457 CGMHSCKEACHVGECPPC 474
                 ****************** PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF578506.36E-7156228No hitNo description
PROSITE profilePS500168.814164227IPR019787Zinc finger, PHD-finger
PROSITE patternPS013590167224IPR019786Zinc finger, PHD-type, conserved site
PROSITE profilePS500899.509167225IPR001841Zinc finger, RING-type
CDDcd060089.27E-6258318No hitNo description
SMARTSM004380.05280298IPR000967Zinc finger, NF-X1-type
PfamPF014223.8282297IPR000967Zinc finger, NF-X1-type
CDDcd060081.15E-10325373No hitNo description
PfamPF014222.5E-4335353IPR000967Zinc finger, NF-X1-type
SMARTSM004385.7E-4335354IPR000967Zinc finger, NF-X1-type
CDDcd060081.91E-7389434No hitNo description
PfamPF014220.0023399416IPR000967Zinc finger, NF-X1-type
SMARTSM004381.6E-4399418IPR000967Zinc finger, NF-X1-type
CDDcd060081.65E-12447495No hitNo description
PfamPF014221.6E-5457474IPR000967Zinc finger, NF-X1-type
SMARTSM004383.5E-5457476IPR000967Zinc finger, NF-X1-type
PfamPF0142219515526IPR000967Zinc finger, NF-X1-type
CDDcd060089.62E-8545588No hitNo description
PfamPF014220.22555572IPR000967Zinc finger, NF-X1-type
SMARTSM004380.083555574IPR000967Zinc finger, NF-X1-type
CDDcd060081.11E-5602650No hitNo description
PfamPF014227.8612629IPR000967Zinc finger, NF-X1-type
SMARTSM004380.0043612630IPR000967Zinc finger, NF-X1-type
CDDcd060082.41E-4655713No hitNo description
PfamPF014220.14665680IPR000967Zinc finger, NF-X1-type
SMARTSM004381.9665695IPR000967Zinc finger, NF-X1-type
CDDcd060082.79E-5693742No hitNo description
PfamPF014220.14697723IPR000967Zinc finger, NF-X1-type
SMARTSM004380.028704725IPR000967Zinc finger, NF-X1-type
Gene3DG3DSA:3.30.70.3302.0E-5941998IPR012677Nucleotide-binding alpha-beta plait domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009642Biological Processresponse to light intensity
GO:0009651Biological Processresponse to salt stress
GO:0009697Biological Processsalicylic acid biosynthetic process
GO:0010188Biological Processresponse to microbial phytotoxin
GO:0010310Biological Processregulation of hydrogen peroxide metabolic process
GO:0042742Biological Processdefense response to bacterium
GO:0005634Cellular Componentnucleus
GO:0000166Molecular Functionnucleotide binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
GO:0016874Molecular Functionligase activity
Sequence ? help Back to Top
Protein Sequence    Length: 1139 aa     Download sequence    Send to blast
MSSQLRRERR DWSRVPPQGA TRQEWVPRGA AAASSNVAQP SNLHSNNNAD AGSSNQGVAV  60
AAPSSVSRAR SNNHGNDSVA APPVNRGRSK NHGKDSVSSN QGVAVAALAS RGRSNNHGTH  120
RMEKEKDKGN KSGSQVEKGL GVGVRYSSLP QLVQEIQEKL MKGTVECMIC YEMVQRSAAV  180
WSCSSCYSIF HLNCIKKWAR APISSDLSLS VEKNHELNWR CPGCQSVKFT SSKEIRYVCF  240
CGKRIDPPSD LYLTPHSCGE PCGKPLQKVL VAGGNRDDLC PHACVLQCHP GPCPPCKAFA  300
PPRLCPCGKK NITTRCSDRQ SVLTCGQCCD KLLECGRHRC EHICHVGPCN PCKVPISATC  360
FCSKKTEVFS CGDMSVKGEI EAKGGVFACG SYCLKKLGCG NHVCSEICHP GSCGECEFLP  420
SRVKTCCCGK TRLENERQSC LDPIPTCSKV CGKLLHCGMH SCKEACHVGE CPPCLVEVSQ  480
KCRCGSTSRT VECYKTTMEN EKFLCEKSCG IKKNCGRHRC SERCCPFTNS NHYNTFSGDW  540
APHFCSMPCG KKLRCGQHSC ECLCHSGHCP PCFQTIFNEL ACACGRTSIP PPLPCGTPPP  600
SCQLPCSVPQ PCGHSVSHSC HFGDCPPCSV PVAKECIGGH VVLRNIPCGS KDIRCNHPCG  660
KTRQCGLHAC GRTCHPPPCD SQSGVVQGFK APCGQTCGAP RRSCRHTCMA PCHPSSPCPD  720
IRCEFPVTIT CSCGRVTANV PCDGGGSSSN YNADAIHEAS IIQTLPAPLQ PVDANGKKVP  780
LGQRKLICDD ECAKLERKRV LADAFDITAP NLDSLHFSDN SLSSELLSDF FRREPKWVLA  840
VEERCKILVL GKSRGIGTAH GLKVHIFCPM LKEKRDAVRL IADRWKLAVN AAGWEPKRFI  900
VISVTPKSKA PARVIGVKGT TTLNVPLPPA FDPLVDMDPR LVVSFPDLPR DTEINSLVLR  960
FGGECELVWL NDKNALAVFH DPARAATAMR RLDYATVYQG AVLVAPNAGA LVASSATNAW  1020
GGAGAMKGGG ALPALKGNSW KKAVAQDSGW GDSGVGEEWT AGSVNIQPSV WKKEAPLAAS  1080
LNRWNVLEQE SSSSSSSTTI RADISGKKTE NTGEEGGSKE EENLDATSEV VDDWEKAYE
Functional Description ? help Back to Top
Source Description
UniProtMediates E2-dependent ubiquitination (By similarity). Confers resistance to osmotic stress such as high salinity. Promotes H(2)O(2) production. Negative regulator of some defense-related genes via an salicylic acid (SA)-dependent signaling pathway. Confers susceptibility to the compatible phytopathogen Pseudomonas syringae pv. tomato strain DC3000 (Pst DC3000). Mediates resistance to type A trichothecenes (phytotoxins produced by phytopathogenic fungi). {ECO:0000250, ECO:0000269|PubMed:16905136, ECO:0000269|PubMed:18069941, ECO:0000269|PubMed:19704430}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN43649.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By brassinosteroids, osmotic stress and high salinity. Accumulates in response to SA, ethylene, methyl jasmonate (MeJA), flagellin (e.g. flg22), and type A trichothecenes such as T-2 toxin and diacetoxyscirpenol (DAS), but not in response to type B trichothecenes such as deoxynivalenol (DON). {ECO:0000269|PubMed:16905136, ECO:0000269|PubMed:18069941, ECO:0000269|PubMed:19704430}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003533318.10.0NF-X1-type zinc finger protein NFXL1
RefseqXP_014617705.10.0NF-X1-type zinc finger protein NFXL1
RefseqXP_028181803.10.0NF-X1-type zinc finger protein NFXL1-like
RefseqXP_028181804.10.0NF-X1-type zinc finger protein NFXL1-like
SwissprotQ9SY590.0NFXL1_ARATH; NF-X1-type zinc finger protein NFXL1
TrEMBLA0A0B2SHB30.0A0A0B2SHB3_GLYSO; NF-X1-type zinc finger protein NFXL1
STRINGGLYMA09G30343.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF69723145
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G10170.10.0NF-X-like 1
Publications ? help Back to Top
  1. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]