PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN43666.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family BBR-BPC
Protein Properties Length: 282aa    MW: 31234.9 Da    PI: 10.2911
Description BBR-BPC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN43666.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GAGA_bind360.33.9e-11012821301
   GAGA_bind   1 mdddgsre.rnkgyyepaaslkenlglqlmssiaerdaki.rernlalsekkaavaerd..........maflqrdkalaernkalverdnkllalllv 87 
                 md d+  + rn+gyyepa+s+k++lglqlmss++e+     r++ + l+++++a+++rd          m++ +rd+++++        ++k+++++++
  KHN43666.1   1 MDGDNGLNiRNWGYYEPATSFKSHLGLQLMSSMPEKPLIGgRNAAV-LAGTNGAFHHRDiggmpqatypMEY-MRDAWISQ--------RDKYMNMIPT 89 
                 888888888*************************988766355555.9************************.9*******........789******9 PP

   GAGA_bind  88 enslasalpvgvqvlsgtksidslqqlsepqledsavelreeeklealpieeaaeeakekkkkkkrqrakkpkekkakkkkkksekskkkvkkesader 186
                 +++        ++ +++t+s++++q++     + +  +      +e++p+eea+  +ke+ ++kkrq++k+pk++kakk+k+ ++++k++++++   +r
  KHN43666.1  90 NHN--------YGGIPETSSAHQIQMI-----QAPELP------KEEKPVEEAPVIEKENGTRKKRQSSKVPKSPKAKKPKRGPRAPKDESAPAV--QR 167
                 997........999************3.....333223......3458999999999*************************9999988888887..79 PP

   GAGA_bind 187 skaekksidlvlngvslDestlPvPvCsCtGalrqCYkWGnGGWqSaCCtttiSvyPLPvstkrrgaRiagrKmSqgafkklLekLaaeGydlsnpvDL 285
                 ++ +kk++++v+ng+++D+s++P+PvCsCtGa++qCYkWG+GGWqSaCCtt +SvyPLP+stkrrgaRiagrKmS gafkk+LekLaaeGy++snp+DL
  KHN43666.1 168 ARIPKKTTEIVINGIDMDISSIPIPVCSCTGAPQQCYKWGSGGWQSACCTTGMSVYPLPMSTKRRGARIAGRKMSIGAFKKVLEKLAAEGYNFSNPIDL 266
                 *************************************************************************************************** PP

   GAGA_bind 286 kdhWAkHGtnkfvtir 301
                 +++WAkHGtnkfvtir
  KHN43666.1 267 RTYWAKHGTNKFVTIR 282
                 ***************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF062172.7E-1151282IPR010409GAGA-binding transcriptional activator
SMARTSM012261.1E-1681282IPR010409GAGA-binding transcriptional activator
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 282 aa     Download sequence    Send to blast
MDGDNGLNIR NWGYYEPATS FKSHLGLQLM SSMPEKPLIG GRNAAVLAGT NGAFHHRDIG  60
GMPQATYPME YMRDAWISQR DKYMNMIPTN HNYGGIPETS SAHQIQMIQA PELPKEEKPV  120
EEAPVIEKEN GTRKKRQSSK VPKSPKAKKP KRGPRAPKDE SAPAVQRARI PKKTTEIVIN  180
GIDMDISSIP IPVCSCTGAP QQCYKWGSGG WQSACCTTGM SVYPLPMSTK RRGARIAGRK  240
MSIGAFKKVL EKLAAEGYNF SNPIDLRTYW AKHGTNKFVT IR
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds to GA-rich elements (GAGA-repeats) present in regulatory sequences of genes involved in developmental processes. Negatively regulates the homeotic gene AGL11/STK, which controls ovule primordium identity, by a cooperative binding to purine-rich elements present in the regulatory sequence leading to DNA conformational changes. {ECO:0000269|PubMed:14731261, ECO:0000269|PubMed:15722463}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN43666.1
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF5024310.0AF502431.1 Glycine max GAGA-binding protein (gbp) mRNA, complete cds.
GenBankBT0933840.0BT093384.1 Soybean clone JCVI-FLGm-17A2 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001236213.10.0GAGA-binding protein
RefseqXP_006586719.10.0GAGA-binding protein isoform X1
RefseqXP_006586720.10.0GAGA-binding protein isoform X1
RefseqXP_006586721.10.0GAGA-binding protein isoform X1
RefseqXP_028181775.10.0protein BASIC PENTACYSTEINE2-like
RefseqXP_028181776.10.0protein BASIC PENTACYSTEINE2-like
RefseqXP_028181777.10.0protein BASIC PENTACYSTEINE2-like
RefseqXP_028181778.10.0protein BASIC PENTACYSTEINE2-like
SwissprotQ9SKD02e-94BPC1_ARATH; Protein BASIC PENTACYSTEINE1
TrEMBLA0A0B2SA820.0A0A0B2SA82_GLYSO; Protein BASIC PENTACYSTEINE1
TrEMBLQ8LKV10.0Q8LKV1_SOYBN; GAGA-binding protein
STRINGGLYMA09G30050.30.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF23703283
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G14685.32e-88basic pentacysteine 2
Publications ? help Back to Top
  1. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]