PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

KHN43675.1

Organism

Glycine soja

Taxonomic ID

3848

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja

Family

MYB

Protein Properties

Length: 237aa MW: 27718.8 Da PI: 7.597

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
KHN43675.1	genome	TCUHK	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	55.9	9.8e-18	4	49	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg W + Ede+l ++v+++G+++W++Ia+++ gR++k+c++rw++ KHN43675.1 4 RGHWRPAEDEKLRELVERYGPHNWNAIAEKLR-GRSGKSCRLRWFNQ 49 899***************************.*********996 PP
2	Myb_DNA-binding	57.8	2.4e-18	56	100	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 r ++T+eE+e+l+ ++ +G++ W+ Iar+++ gRt++ +k++w+ KHN43675.1 56 RSPFTEEEEERLLASHRIHGNR-WAVIARHFP-GRTDNAVKNHWHVM 100 789*****************.*****.*********975 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	19.168	1	50	IPR017930	Myb domain
SMART	SM00717	2.9E-15	3	52	IPR001005	SANT/Myb domain
Pfam	PF00249	2.3E-17	4	49	IPR001005	SANT/Myb domain
SuperFamily	SSF46689	8.99E-30	4	97	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	3.7E-27	5	57	IPR009057	Homeodomain-like
CDD	cd00167	3.62E-14	7	48	No hit	No description
PROSITE profile	PS51294	25.253	51	105	IPR017930	Myb domain
SMART	SM00717	1.7E-16	55	103	IPR001005	SANT/Myb domain
Pfam	PF00249	3.3E-15	56	99	IPR001005	SANT/Myb domain
CDD	cd00167	8.11E-13	58	101	No hit	No description
Gene3D	G3DSA:1.10.10.60	2.2E-21	58	103	IPR009057	Homeodomain-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 237 aa Download sequence Send to blast
MCSRGHWRPA EDEKLRELVE RYGPHNWNAI AEKLRGRSGK SCRLRWFNQL DPRINRSPFT 60 EEEEERLLAS HRIHGNRWAV IARHFPGRTD NAVKNHWHVM MARIRRERSK NYSPKQPLFP 120 PNLQVDLETN FETFPSFVDK YYEKYSHPCV ALTHSSFQFP TKNFYFQDPS SAGSTVPRDN 180 CESVEFYDFL QVNTDSNKSE VTDNARRDEE EVSQDAVGMK NKDNGVPFID FLSTGGC

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1a5j_A	3e-32	4	103	7	106	B-MYB
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that confers sensitivity to abscisic acid (ABA) and salt, but tolerance to drought (PubMed:21399993). Regulates secondary cell wall (SCW) biosynthesis, especially in interfascicular and xylary fibers (PubMed:18952777, PubMed:23781226). {ECO:0000269\|PubMed:18952777, ECO:0000269\|PubMed:21399993, ECO:0000269\|PubMed:23781226}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	KHN43675.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By abscisic acid (PubMed:16463103, PubMed:21399993). Accumulates in response to salt (PubMed:21399993). Triggered by MYB46 and MYB83 in the regulation of secondary cell wall biosynthesis (PubMed:19674407, PubMed:22197883). {ECO:0000269\|PubMed:16463103, ECO:0000269\|PubMed:19674407, ECO:0000269\|PubMed:21399993, ECO:0000269\|PubMed:22197883}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT092893	0.0	BT092893.1 Soybean clone JCVI-FLGm-12J9 unknown mRNA.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_028180154.1	1e-180	transcription factor MYB52-like
Swissprot	Q6R0C4	6e-83	MYB52_ARATH; Transcription factor MYB52
TrEMBL	A0A0B2SF78	1e-179	A0A0B2SF78_GLYSO; Transcription factor MYB44
STRING	GLYMA09G29940.1	1e-178	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF230	34	243

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G17950.1	3e-85	myb domain protein 52

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Cassan-Wang H, et al. Identification of novel transcription factors regulating secondary cell wall formation in Arabidopsis. Front Plant Sci, 2013. 4: p. 189 [PMID:23781226] Qi X, et al. Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing. Nat Commun, 2014. 5: p. 4340 [PMID:25004933] Shi D, et al. MYB52 Negatively Regulates Pectin Demethylesterification in Seed Coat Mucilage. Plant Physiol., 2018. 176(4): p. 2737-2749 [PMID:29440562]