PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN43747.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family bHLH
Protein Properties Length: 351aa    MW: 37482.4 Da    PI: 6.7057
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN43747.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH37.54.4e-12264309555
                 HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
         HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                 h+++Er RR+ri +++  L+el+P+a      K +Ka++L + ++Y+k Lq
  KHN43747.1 264 HSIAERLRRERIAERMKALQELVPNA-----NKTDKASMLDEIIDYVKFLQ 309
                 99***********************8.....6******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000832.35E-13257313No hitNo description
SuperFamilySSF474593.66E-17257319IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088817.39259308IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.2E-16261318IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.1E-9264309IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.5E-13265314IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 351 aa     Download sequence    Send to blast
MQPCSREMQG LNSLLNSSSQ ISLQDLQNHT TNQIQNSHMN HQHQLAHFDS TSHDDFLEQM  60
LSSCSWTDLN PNKPLLWDPN TLNDIKPPDE TTPSNNNNDA TTNVAAFSSF DEHSTLASKF  120
RNHQISSNNN APKNAAAAAL MLQHQLLRDS GLLNMPLSLP GNDVVVDAST FESPNPSGKA  180
SVQTLYNGFA GSLHGVGQSS NQTQHFQHPQ GSSNPMQGQN FGAVPAGGGS ATNQAPASGA  240
AAGGAPAQPR QRVRARRGQA TDPHSIAERL RRERIAERMK ALQELVPNAN KTDKASMLDE  300
IIDYVKFLQL QVKVLSMSRL GGAAAVAPLV ADMSSEAAIA GNDGAASVSK P
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1268273RLRRER
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN43747.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028203155.10.0transcription factor bHLH82-like
TrEMBLA0A0B2SHH30.0A0A0B2SHH3_GLYSO; Transcription factor bHLH66
STRINGGLYMA15G33020.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF47783352
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24260.18e-23LJRHL1-like 1
Publications ? help Back to Top
  1. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]