PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN43827.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family FAR1
Protein Properties Length: 210aa    MW: 24358 Da    PI: 8.4009
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN43827.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR122.63.5e-076465291
        FAR1 52 rrtraetrtgCkaklkvkkek.dgkwevtkleleHnHelap 91
                  +r+ trt+C  +l+v +++    w+v+ +++ HnHel+p
  KHN43827.1  6 GDHRPMTRTKCPGRLHVLLDYkIFMWRVSIFDETHNHELTP 46
                568999**************97899*************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF105513.6E-8168209IPR018289MULE transposase domain
Sequence ? help Back to Top
Protein Sequence    Length: 210 aa     Download sequence    Send to blast
MVDRKGDHRP MTRTKCPGRL HVLLDYKIFM WRVSIFDETH NHELTPVNHV HRMVRYHVMS  60
NLDKAQVDSL HSFGVRIYCI MGYLLGQRGS YDSIGFLRSD LYNHLHQKKR LIIKEGDVCV  120
ALSYFEGKDV IDPMFYSKIE TSTDEKLNHL FLADGCSRSN FQCFGDIFAF DATYKKNRCN  180
KPLVIFLGCN HRSHINIFGC SLLTDETTGT
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN43827.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_029126074.13e-70protein FAR1-RELATED SEQUENCE 5-like
TrEMBLA0A0B2SHN11e-155A0A0B2SHN1_GLYSO; Protein FAR1-RELATED SEQUENCE 5
STRINGGLYMA07G35355.11e-39(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF3290752
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.11e-30FAR1-related sequence 5
Publications ? help Back to Top
  1. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]